Miyakogusa Predicted Gene

Lj0g3v0218689.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0218689.1 tr|G7K0D4|G7K0D4_MEDTR RRNA intron-encoded homing
endonuclease OS=Medicago truncatula GN=MTR_5g05102,84.21,0.00000001,
,CUFF.14139.1
         (45 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0055s0130.1 | hypothetical protein | HC | scaffold0055:7335...    60   3e-10

>Medtr0055s0130.1 | hypothetical protein | HC |
           scaffold0055:73353-68450 | 20130731
          Length = 839

 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/38 (84%), Positives = 32/38 (84%), Gaps = 1/38 (2%)

Query: 1   MHLLDKRSTQALPVALMMIHDNSSDCTTFVPMTHHSNF 38
           MHLLDKRSTQALPVAL MIHDNSSD T  V  THHSNF
Sbjct: 435 MHLLDKRSTQALPVAL-MIHDNSSDRTALVLATHHSNF 471