Miyakogusa Predicted Gene

Lj0g3v0217659.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0217659.1 tr|B9HBX1|B9HBX1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_561467 PE=3
SV=1,52.88,2e-18,SUBFAMILY NOT NAMED,NULL; NITRATE, FROMATE, IRON
DEHYDROGENASE,NULL; A_tha_TIGR01569: plant integral,CUFF.14060.1
         (197 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g058560.1 | casparian strip membrane protein | HC | chr1:2...   224   5e-59
Medtr1g058570.1 | casparian strip membrane protein | HC | chr1:2...   220   8e-58
Medtr1g058540.1 | casparian strip membrane protein | HC | chr1:2...   216   1e-56
Medtr2g086740.1 | plant integral membrane protein | HC | chr2:36...   129   1e-30
Medtr7g011090.1 | casparian strip membrane protein | HC | chr7:2...   108   3e-24
Medtr4g081880.1 | casparian strip membrane protein | HC | chr4:3...    99   2e-21
Medtr5g041900.1 | casparian strip membrane protein | HC | chr5:1...    95   5e-20
Medtr2g086740.2 | plant integral membrane protein | HC | chr2:36...    90   2e-18

>Medtr1g058560.1 | casparian strip membrane protein | HC |
           chr1:25810191-25808737 | 20130731
          Length = 195

 Score =  224 bits (570), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 117/195 (60%), Positives = 126/195 (64%), Gaps = 1/195 (0%)

Query: 1   MSTTIDMPGSSKAAKAGKPVLVTTPSRPGGWKKGVAIMDFXXXXXXXXXXXXXXXTMGLS 60
           MST ID+  SSK  K GK VLV  P+RPGGWKKG+AIMDF               +MG S
Sbjct: 1   MSTKIDIQESSKDTK-GKAVLVAAPARPGGWKKGIAIMDFILRLGAIAAALAAAASMGTS 59

Query: 61  DQTLPXXXXXXXXEASYDSFTTFQFFVITMALVAGYLVLSLPLSIVAIVRPHAAGPRLFL 120
           DQ+LP        EASYDSF  FQFF+I MA+VAGYLVLSLP SIVAI+RPHA GPRLFL
Sbjct: 60  DQSLPFFTQFFQFEASYDSFPAFQFFLIAMAIVAGYLVLSLPFSIVAIIRPHATGPRLFL 119

Query: 121 IILDTVFXXXXXXXXXXXXXIVYLAHNGNQDTNWIAICNQFGDFCAQTSGXXXXXXXXXX 180
           IILDTVF             IVYLAHNGNQDTNW+AICNQFGDFCAQTSG          
Sbjct: 120 IILDTVFLTLATASAASAASIVYLAHNGNQDTNWLAICNQFGDFCAQTSGAVVASFITVV 179

Query: 181 XXXXXXXMSALVLGK 195
                  MSAL LGK
Sbjct: 180 VLIVLVVMSALALGK 194


>Medtr1g058570.1 | casparian strip membrane protein | HC |
           chr1:25816955-25815748 | 20130731
          Length = 194

 Score =  220 bits (560), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 117/195 (60%), Positives = 126/195 (64%), Gaps = 2/195 (1%)

Query: 1   MSTTIDMPGSSKAAKAGKPVLVTTPSRPGGWKKGVAIMDFXXXXXXXXXXXXXXXTMGLS 60
           MSTTID+P SS   K  K +LV  P+RPGGWKKG AIMDF               +MG S
Sbjct: 1   MSTTIDVPESSNINKE-KTILVA-PARPGGWKKGTAIMDFILRLGAIAAAIAAAASMGTS 58

Query: 61  DQTLPXXXXXXXXEASYDSFTTFQFFVITMALVAGYLVLSLPLSIVAIVRPHAAGPRLFL 120
           DQTLP        EASYDSFTTFQFFVI+MA+ A YLVLSLP SIVAI+RPHA GPRLFL
Sbjct: 59  DQTLPFFTQFFQFEASYDSFTTFQFFVISMAIAASYLVLSLPFSIVAIIRPHAPGPRLFL 118

Query: 121 IILDTVFXXXXXXXXXXXXXIVYLAHNGNQDTNWIAICNQFGDFCAQTSGXXXXXXXXXX 180
           IILDTVF             IVYLAHNGNQDTNW+AICNQFGDFCAQTSG          
Sbjct: 119 IILDTVFLTLATSSAAAAASIVYLAHNGNQDTNWLAICNQFGDFCAQTSGAVVASFITVV 178

Query: 181 XXXXXXXMSALVLGK 195
                  MSAL +GK
Sbjct: 179 VLILLVVMSALAIGK 193


>Medtr1g058540.1 | casparian strip membrane protein | HC |
           chr1:25798149-25796910 | 20130731
          Length = 196

 Score =  216 bits (549), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 112/196 (57%), Positives = 120/196 (61%)

Query: 1   MSTTIDMPGSSKAAKAGKPVLVTTPSRPGGWKKGVAIMDFXXXXXXXXXXXXXXXTMGLS 60
           MSTTIDM  SS A    K  L+  P+RPGGWKKG+AIMDF               TM  S
Sbjct: 1   MSTTIDMAESSNAHVNEKAALIGAPARPGGWKKGIAIMDFVLRLGAIAASLAATITMATS 60

Query: 61  DQTLPXXXXXXXXEASYDSFTTFQFFVITMALVAGYLVLSLPLSIVAIVRPHAAGPRLFL 120
           DQ LP        EASYDSF+TFQFFVI MA V GYLVLSLP SIV I+RPHA GPRLFL
Sbjct: 61  DQILPFFTQFLQFEASYDSFSTFQFFVIAMAFVGGYLVLSLPFSIVTIIRPHAPGPRLFL 120

Query: 121 IILDTVFXXXXXXXXXXXXXIVYLAHNGNQDTNWIAICNQFGDFCAQTSGXXXXXXXXXX 180
           IILDTVF             +V LAHNGNQD+NW+AICNQFGDFCAQTSG          
Sbjct: 121 IILDTVFLTLATASGASAAAMVSLAHNGNQDSNWLAICNQFGDFCAQTSGAVVASFITVV 180

Query: 181 XXXXXXXMSALVLGKK 196
                  MSAL LGK 
Sbjct: 181 VLMVLVVMSALALGKH 196


>Medtr2g086740.1 | plant integral membrane protein | HC |
           chr2:36464677-36466663 | 20130731
          Length = 220

 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 81/146 (55%)

Query: 24  TPSRPGGWKKGVAIMDFXXXXXXXXXXXXXXXTMGLSDQTLPXXXXXXXXEASYDSFTTF 83
           TP + GG KKG+AI+DF                MG ++Q LP         A +D F  F
Sbjct: 48  TPLQKGGMKKGIAILDFILRLGAIGAALGAAVIMGTNEQILPFFTQFLQFHAQWDDFPMF 107

Query: 84  QFFVITMALVAGYLVLSLPLSIVAIVRPHAAGPRLFLIILDTVFXXXXXXXXXXXXXIVY 143
           +FFV+     AG+L+LSLP SIV IVRP AAGPR  L+I+D V              +VY
Sbjct: 108 KFFVVANGAAAGFLILSLPFSIVCIVRPLAAGPRFLLVIVDLVLMALVVAAASSAAAVVY 167

Query: 144 LAHNGNQDTNWIAICNQFGDFCAQTS 169
           LAHNG+QD NW AIC QF DFC  +S
Sbjct: 168 LAHNGSQDANWNAICQQFTDFCQGSS 193


>Medtr7g011090.1 | casparian strip membrane protein | HC |
           chr7:2905231-2907425 | 20130731
          Length = 186

 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 87/173 (50%)

Query: 24  TPSRPGGWKKGVAIMDFXXXXXXXXXXXXXXXTMGLSDQTLPXXXXXXXXEASYDSFTTF 83
           T ++ G  K+GV+I+DF                MG +D++LP         A+YD   T 
Sbjct: 14  TSNQKGNMKRGVSILDFILRLIAIVATLASAIAMGTTDESLPFFTQFVRFRANYDDLPTL 73

Query: 84  QFFVITMALVAGYLVLSLPLSIVAIVRPHAAGPRLFLIILDTVFXXXXXXXXXXXXXIVY 143
           +FFV+  A+V+GYL+LSLPLSI+ I+R  A   R+  IILDTV              IVY
Sbjct: 74  RFFVVASAIVSGYLILSLPLSILHIIRSSAGMTRVIFIILDTVMLGLLTAGSSAAASIVY 133

Query: 144 LAHNGNQDTNWIAICNQFGDFCAQTSGXXXXXXXXXXXXXXXXXMSALVLGKK 196
           LAH GN+  NW A C Q+  FC + SG                 +SALVL ++
Sbjct: 134 LAHKGNRKANWFAFCQQYNSFCERISGSLIGSFIAIPLFIMLILLSALVLSRR 186


>Medtr4g081880.1 | casparian strip membrane protein | HC |
           chr4:31869526-31871135 | 20130731
          Length = 189

 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/169 (33%), Positives = 74/169 (43%), Gaps = 1/169 (0%)

Query: 30  GWKKGVAIMDFXXXXXXXXXXXXXXXTMGLSDQTLPXXXXXXXXEASYDSFTTFQFFVIT 89
           G K+G++IMDF               +MG + QT+P        + S+    TF FFV  
Sbjct: 21  GMKRGLSIMDFILRIFAAMSTLGSALSMGTAKQTMPFATRFVRFKVSFHDLPTFLFFVTA 80

Query: 90  MALVAGYLVLSLPLSIVAIVRPHAAGPRLFLIILDTVFXXXXXXXXXXXXXIVYLAHNGN 149
            ++V GYL LSL LS   IVR  +   R+ L+ LDTV              IVY+AH GN
Sbjct: 81  NSIVCGYLALSLVLSFFHIVRTISVKSRILLVFLDTVMFGLLTSGASAAAAIVYVAHYGN 140

Query: 150 QDTNWIAICNQFGDFCAQTSGXXXXXXXXXXXXXXXXXMSALVLGK-KH 197
              NW   C Q+  FC + SG                 MS + + K KH
Sbjct: 141 PSANWFPFCQQYNSFCGRISGSLVGSFIAVVIFMILILMSGISISKSKH 189


>Medtr5g041900.1 | casparian strip membrane protein | HC |
           chr5:18399261-18401571 | 20130731
          Length = 186

 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 71/147 (48%)

Query: 24  TPSRPGGWKKGVAIMDFXXXXXXXXXXXXXXXTMGLSDQTLPXXXXXXXXEASYDSFTTF 83
             S   G K+G++IMDF                MG +D+ LP         A YD   +F
Sbjct: 14  NASTNKGVKRGLSIMDFILRIIAGVATLASAVAMGTTDERLPFATSFVQFRAEYDDLPSF 73

Query: 84  QFFVITMALVAGYLVLSLPLSIVAIVRPHAAGPRLFLIILDTVFXXXXXXXXXXXXXIVY 143
            FFV+  ++V GYL LSL LSI+ IVR  A   R+ LI+LD V              IVY
Sbjct: 74  VFFVLANSIVCGYLALSLILSILHIVRSTAVKSRILLIVLDMVMMGLLAAAASAAASIVY 133

Query: 144 LAHNGNQDTNWIAICNQFGDFCAQTSG 170
           +AH GN   NW  IC Q+  FC + SG
Sbjct: 134 IAHYGNTQANWFPICQQYNSFCERISG 160


>Medtr2g086740.2 | plant integral membrane protein | HC |
           chr2:36464677-36466663 | 20130731
          Length = 155

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 58/103 (56%)

Query: 24  TPSRPGGWKKGVAIMDFXXXXXXXXXXXXXXXTMGLSDQTLPXXXXXXXXEASYDSFTTF 83
           TP + GG KKG+AI+DF                MG ++Q LP         A +D F  F
Sbjct: 48  TPLQKGGMKKGIAILDFILRLGAIGAALGAAVIMGTNEQILPFFTQFLQFHAQWDDFPMF 107

Query: 84  QFFVITMALVAGYLVLSLPLSIVAIVRPHAAGPRLFLIILDTV 126
           +FFV+     AG+L+LSLP SIV IVRP AAGPR  L+I+D V
Sbjct: 108 KFFVVANGAAAGFLILSLPFSIVCIVRPLAAGPRFLLVIVDLV 150