Miyakogusa Predicted Gene

Lj0g3v0217619.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0217619.1 tr|Q3LT95|Q3LT95_VIBHA 50S ribosomal protein L27
OS=Vibrio harveyi GN=rpmA PE=3
SV=1,73.44,2e-19,Ribosomal_L27,Ribosomal protein L27;
RIBOSOMAL_L27,Ribosomal protein L27, conserved site; RIBOSOMAL
,CUFF.14056.1
         (140 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g014010.1 | 50S ribosomal protein L27 | HC | chr3:3871485-...   202   6e-53
Medtr3g020680.1 | 50S ribosomal protein L27 | HC | chr3:6000247-...    87   4e-18

>Medtr3g014010.1 | 50S ribosomal protein L27 | HC |
           chr3:3871485-3868099 | 20130731
          Length = 148

 Score =  202 bits (515), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 96/105 (91%), Positives = 102/105 (97%)

Query: 36  MNFGASLCRRLSIKELVTNVPVYRSTGDVSGEGLSMVFSRWASKKTAGSTKNGRDSKPKN 95
           MNF +SLCRRL+IKELVTNVPVYRST DVSGEGLS+VF RWA+KKTAGSTKNGRDSKPKN
Sbjct: 1   MNFASSLCRRLNIKELVTNVPVYRSTADVSGEGLSLVFRRWATKKTAGSTKNGRDSKPKN 60

Query: 96  LGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFALKQG 140
           LGVKKFGGERVIPGNIIVRQRGTRFHPGNYVG+GKDHTLFALK+G
Sbjct: 61  LGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDHTLFALKEG 105


>Medtr3g020680.1 | 50S ribosomal protein L27 | HC |
           chr3:6000247-5996353 | 20130731
          Length = 193

 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 52/71 (73%)

Query: 70  SMVFSRWASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIG 129
           S +  R A KK AGSTKNGRDS  K LGVK +G +   PG+IIVRQRGT+FH G  VGIG
Sbjct: 51  SALIIRNAHKKGAGSTKNGRDSAGKRLGVKVYGDQVAKPGSIIVRQRGTKFHAGKNVGIG 110

Query: 130 KDHTLFALKQG 140
           KDHT+F+L  G
Sbjct: 111 KDHTIFSLIDG 121