Miyakogusa Predicted Gene
- Lj0g3v0216909.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0216909.1 tr|A8HQL5|A8HQL5_CHLRE Predicted protein
OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_157307 PE=4
SV=1,27.95,4e-17,Tryptophan synthase beta subunit-like PLP-dependent
enzymes,Tryptophan synthase beta subunit-like PL,CUFF.14078.1
(418 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g086360.1 | pyridoxal-5'-phosphate-dependent enzyme family... 713 0.0
Medtr8g107670.1 | 1-aminocyclopropane-1-carboxylate deaminase, p... 62 1e-09
Medtr8g107670.3 | 1-aminocyclopropane-1-carboxylate deaminase, p... 50 4e-06
>Medtr3g086360.1 | pyridoxal-5'-phosphate-dependent enzyme family
protein | HC | chr3:39117867-39122203 | 20130731
Length = 426
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/419 (82%), Positives = 372/419 (88%), Gaps = 8/419 (1%)
Query: 1 MRNLIHSNTLQVISKPKLKTEEFIEKLLNRRWTLPCPETKIHQVIHGNGLHGRNFLLNTQ 60
MRN I S+ QVI KPKL +EE +EKLLNR WTLP PETKIHQVIH +GL RNFLLNT
Sbjct: 1 MRNAIRSSAFQVILKPKLLSEESMEKLLNRTWTLPNPETKIHQVIHQHGLGARNFLLNTN 60
Query: 61 PAFRDGTVEMDKQKKSFYIVRDDLLHPLINGNKGRKLDGLLPLIEDYSVTDVVTCGGCQS 120
P FR+G VE+DKQ+KSFY+VRDDLLHP+INGNK RKLDGLLPL+ DYSVTDVVTCGGCQS
Sbjct: 61 PDFRNGNVEIDKQRKSFYLVRDDLLHPVINGNKARKLDGLLPLLHDYSVTDVVTCGGCQS 120
Query: 121 AHTAAIAVLCAERGIVSHLLLRGEQPEILTGYNLMSTIYGNVTYVPRTIYANREDMLKSY 180
AHTAAIAVLCAERGIVSHLLLRGEQPEILTGYNLMSTIYGNVTYVPR +YANRE+MLK+Y
Sbjct: 121 AHTAAIAVLCAERGIVSHLLLRGEQPEILTGYNLMSTIYGNVTYVPRNVYANREEMLKNY 180
Query: 181 AKSVAGNHGSVHWFSDIIQAS-------SNFMQMDVSTSEGNHLQKILIVNEGAGDSVAL 233
A+SVAGN GSV WFSDIIQAS SNFMQ D S SEGNHLQKILIVNEGAGDSVAL
Sbjct: 181 AESVAGNSGSVLWFSDIIQASSTNELSTSNFMQTDASRSEGNHLQKILIVNEGAGDSVAL 240
Query: 234 LGIIRLVQYLSQDHLLGKQRAMKFVLDAGTGTTAVGIGLAAHCLGLPWEVYAVMLADKID 293
LGIIRLVQYLSQ+HLLGKQRAMKFV+DAGTGTTAVGIGLAA CLGLPWEVYAVMLADKID
Sbjct: 241 LGIIRLVQYLSQNHLLGKQRAMKFVVDAGTGTTAVGIGLAALCLGLPWEVYAVMLADKID 300
Query: 294 GYRKQEERLTSEFKKHFNFEFSEHNLNREDAGIVHWVERGHARKFGNILEGEMEACQQIA 353
GYRKQE+RL SEF KHFN EF +H++N++D GIVHWVER H RKFGNIL+GEM CQQIA
Sbjct: 301 GYRKQEKRLISEFNKHFNVEFIDHDVNKDD-GIVHWVERDHPRKFGNILDGEMVVCQQIA 359
Query: 354 QETGILVDPVYTLAAWETAMLLSGKEAEGGPEVVMLHTGGTFGMFGLAQRYKNYFGKLK 412
Q+TGILVDPVYTLAAWE AMLLS +E EG EVVMLHTGGT G+FGLAQRYKNYFG LK
Sbjct: 360 QQTGILVDPVYTLAAWEAAMLLSSEENEGRAEVVMLHTGGTLGLFGLAQRYKNYFGMLK 418
>Medtr8g107670.1 | 1-aminocyclopropane-1-carboxylate deaminase,
putative | HC | chr8:45526885-45519813 | 20130731
Length = 388
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 149/342 (43%), Gaps = 41/342 (11%)
Query: 78 YIVRDDLLHPLINGNKGRKLDGLLPLIEDYSVTDVVTCGGCQSAHTAAIAVLCAERGIVS 137
++ RDDL ++GNK RKL+ L+ S V+T GG QS H A AV +
Sbjct: 65 WLKRDDLSGMQLSGNKVRKLEFLMADAIAESADSVITIGGIQSNHCRATAVAAKYLNLDP 124
Query: 138 HLLLRGEQPEILTGYNLMSTIYGNVTYVPRTIYANREDMLKSYAKSVAGNHGSVHWFSDI 197
L+LR + +L + T+ GN+ V R I A+ L+ +K GSV
Sbjct: 125 FLILRTSK--LLVDQD--PTLTGNL-LVERLIGAH----LQLISKEEYSQIGSV------ 169
Query: 198 IQASSNFMQMDVSTSEGNHLQKILIVNEGAGDSVALLGIIRLVQYLSQDHLLGKQRAMKF 257
+N ++ + N ++ ++ G +S+ G + V+ + G +KF
Sbjct: 170 --TLANLLKEKLI----NQGRRPYVIPVGGSNSLGTWGYLEAVREIELQIQSGTSN-VKF 222
Query: 258 ---VLDAGTGTTAVGIGLAAHCLGLPWEVYAVMLADKIDGYRKQEERLTSEFKKHFNFEF 314
V+ G+G T G+ L + L V+A + D D + + L K +
Sbjct: 223 DDIVVACGSGGTIAGLALGSSLSTLKARVHAFSVCDDPDYFHNFVQGLLDGLKAGVS--- 279
Query: 315 SEHNLNREDAGIVHWVERGHARKFGNILEGEMEACQQIAQETGILVDPVYTLAAWETAML 374
+R+ IVH ++ + E+ +++A+ TG+++DPVY+ A AML
Sbjct: 280 -----SRD---IVH-IQNAKGLGYAMNTSEELNFVKEVAEATGVVLDPVYSGKA-AYAML 329
Query: 375 LSGKEAEG---GPEVVMLHTGGTFGMFGLAQRYKNYFGKLKK 413
E G +++ +HTGG G++ + ++ G ++
Sbjct: 330 KDMNENPKKWEGRKILFVHTGGLLGLYDKVDQLGSFVGNWQR 371
>Medtr8g107670.3 | 1-aminocyclopropane-1-carboxylate deaminase,
putative | HC | chr8:45526885-45519813 | 20130731
Length = 321
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 125/290 (43%), Gaps = 37/290 (12%)
Query: 78 YIVRDDLLHPLINGNKGRKLDGLLPLIEDYSVTDVVTCGGCQSAHTAAIAVLCAERGIVS 137
++ RDDL ++GNK RKL+ L+ S V+T GG QS H A AV +
Sbjct: 65 WLKRDDLSGMQLSGNKVRKLEFLMADAIAESADSVITIGGIQSNHCRATAVAAKYLNLDP 124
Query: 138 HLLLRGEQPEILTGYNLMSTIYGNVTYVPRTIYANREDMLKSYAKSVAGNHGSVHWFSDI 197
L+LR + +L + T+ GN+ V R I A+ L+ +K GSV
Sbjct: 125 FLILRTSK--LLVDQD--PTLTGNL-LVERLIGAH----LQLISKEEYSQIGSV------ 169
Query: 198 IQASSNFMQMDVSTSEGNHLQKILIVNEGAGDSVALLGIIRLVQYLSQDHLLGKQRAMKF 257
+N ++ + N ++ ++ G +S+ G + V+ + G +KF
Sbjct: 170 --TLANLLKEKLI----NQGRRPYVIPVGGSNSLGTWGYLEAVREIELQIQSGTSN-VKF 222
Query: 258 ---VLDAGTGTTAVGIGLAAHCLGLPWEVYAVMLADKIDGYRKQEERLTSEFKKHFNFEF 314
V+ G+G T G+ L + L V+A + D D + + L K +
Sbjct: 223 DDIVVACGSGGTIAGLALGSSLSTLKARVHAFSVCDDPDYFHNFVQGLLDGLKAGVS--- 279
Query: 315 SEHNLNREDAGIVHWVERGHARKFGNILEGEMEACQQIAQETGILVDPVY 364
+R+ IVH ++ + E+ +++A+ TG+++DPVY
Sbjct: 280 -----SRD---IVH-IQNAKGLGYAMNTSEELNFVKEVAEATGVVLDPVY 320