Miyakogusa Predicted Gene

Lj0g3v0215159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0215159.1 Non Characterized Hit- tr|G7LCQ7|G7LCQ7_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,54.69,0.00000000002,seg,NULL; FAR1,FAR1 DNA binding
domain,CUFF.13873.1
         (113 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g035530.1 | FAR1 DNA-binding domain protein | LC | chr8:12...    73   5e-14
Medtr3g080590.1 | hypothetical protein | LC | chr3:36467363-3646...    71   3e-13
Medtr7g028855.1 | FAR1 DNA-binding domain protein | LC | chr7:99...    65   1e-11
Medtr7g446520.1 | FAR1 DNA-binding domain protein | LC | chr7:15...    65   1e-11
Medtr8g467420.1 | FAR1 DNA-binding domain protein | LC | chr8:24...    47   3e-06

>Medtr8g035530.1 | FAR1 DNA-binding domain protein | LC |
           chr8:12939855-12940085 | 20130731
          Length = 76

 Score = 73.2 bits (178), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 46/64 (71%)

Query: 39  ECYKKINELTADDIRGLEFSTEEEGCLFYHKYAQYRGFASRKDDVYKDNDGNIVTRQLVC 98
           + YKKI +LT DDIRGL F +EE+   +Y  Y ++ GF  RKDDV KD+DGNIV  +L+C
Sbjct: 2   DTYKKIRKLTFDDIRGLRFDSEEKETQYYDIYEEFHGFVIRKDDVNKDSDGNIVACRLIC 61

Query: 99  NKAG 102
           N+ G
Sbjct: 62  NREG 65


>Medtr3g080590.1 | hypothetical protein | LC |
           chr3:36467363-36467839 | 20130731
          Length = 158

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 45/60 (75%)

Query: 41  YKKINELTADDIRGLEFSTEEEGCLFYHKYAQYRGFASRKDDVYKDNDGNIVTRQLVCNK 100
           YK IN++T DD+R +EF+TE+E   FY  +A+Y GF  RKDDV + ++GNI+ RQLVC K
Sbjct: 95  YKCINDVTDDDVRDMEFNTEDEATEFYVLFAKYHGFEVRKDDVKRYSNGNIIMRQLVCKK 154


>Medtr7g028855.1 | FAR1 DNA-binding domain protein | LC |
           chr7:9962811-9960773 | 20130731
          Length = 462

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 45/76 (59%)

Query: 38  GECYKKINELTADDIRGLEFSTEEEGCLFYHKYAQYRGFASRKDDVYKDNDGNIVTRQLV 97
           GE   +IN LTAD IR +EF+   E   FY KY + +GF  RK D+  + +  IV RQ V
Sbjct: 107 GEEMVRINSLTADGIRAMEFAGVVEADDFYFKYGKCKGFYVRKSDIRCNVNDEIVMRQYV 166

Query: 98  CNKAGRRHEKHFKNND 113
           CNK G R +KH   +D
Sbjct: 167 CNKQGLREKKHLSRSD 182


>Medtr7g446520.1 | FAR1 DNA-binding domain protein | LC |
           chr7:15865725-15863746 | 20130731
          Length = 334

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 46/72 (63%)

Query: 38  GECYKKINELTADDIRGLEFSTEEEGCLFYHKYAQYRGFASRKDDVYKDNDGNIVTRQLV 97
           GE   KIN LTA+ IR +EF++ ++   FY KY + + FA RK D+ +D +  IV RQ V
Sbjct: 75  GEEMVKINSLTAEGIREIEFASVDKAYDFYFKYGKCKCFAVRKSDIRRDVNDGIVMRQYV 134

Query: 98  CNKAGRRHEKHF 109
           CNK G R +KH 
Sbjct: 135 CNKQGFREKKHL 146


>Medtr8g467420.1 | FAR1 DNA-binding domain protein | LC |
           chr8:24222776-24223416 | 20130731
          Length = 168

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%)

Query: 27  QHEKDSKSDSEGECYKKINELTADDIRGLEFSTEEEGCLFYHKYAQYRGFASRKDDVYKD 86
           Q E     +  G+    +N + +D+   LEF   +E   F + Y + +GFA RK +   +
Sbjct: 54  QQEGSISDELVGDRLVNVNFIASDENLKLEFGIVDEAYNFNYPYGKCKGFAIRKANARSN 113

Query: 87  NDGNIVTRQLVCNKAGRR 104
           + G I+ RQ VCNK G R
Sbjct: 114 SSGIIIMRQFVCNKHGLR 131