Miyakogusa Predicted Gene

Lj0g3v0214869.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0214869.1 Non Characterized Hit- tr|B4FC91|B4FC91_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,66.67,1e-16,seg,NULL,CUFF.13851.1
         (104 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g113740.1 | transmembrane protein, putative | HC | chr4:46...   136   4e-33

>Medtr4g113740.1 | transmembrane protein, putative | HC |
           chr4:46812595-46809774 | 20130731
          Length = 734

 Score =  136 bits (343), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 67/97 (69%), Positives = 74/97 (76%)

Query: 7   LPSEEEVTQLFIDXXXXXXXXXXXAGRKCRLALSIDANDVRALYNWSLALSFRGQLIADI 66
           + S+EE  QL ID           AGRK RLALSID+NDVRALYNW LALSFR QLIADI
Sbjct: 580 ITSKEEAMQLLIDVCEECEELLVNAGRKYRLALSIDSNDVRALYNWGLALSFRAQLIADI 639

Query: 67  GPGASFEAEIVFLAAIDKFDAMLVKGKVYAPDGIISY 103
           GPGA+FEAE VFLAAIDKFDAML+KG VYAPD +  +
Sbjct: 640 GPGAAFEAERVFLAAIDKFDAMLLKGNVYAPDALFRW 676