Miyakogusa Predicted Gene

Lj0g3v0214359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0214359.1 CUFF.13808.1
         (447 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g017070.1 | DNA polymerase | HC | chr5:6204095-6191331 | 2...   780   0.0  
Medtr3g096525.2 | DNA polymerase delta catalytic subunit | HC | ...    91   2e-18
Medtr3g096525.1 | DNA polymerase delta catalytic subunit | HC | ...    91   2e-18

>Medtr5g017070.1 | DNA polymerase | HC | chr5:6204095-6191331 |
            20130731
          Length = 1526

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/444 (84%), Positives = 395/444 (88%)

Query: 2    PPVVVTAINLKTILNEEQNINEIVSASVVCCNMVKIDTPMLASEWKRPGKLTHFTVIRKL 61
            PPVVVTAINLKT +NE+QNINEIVSASVV CNMVKIDTPMLASEWKRPG LTHFTVIRKL
Sbjct: 557  PPVVVTAINLKTTINEKQNINEIVSASVVSCNMVKIDTPMLASEWKRPGMLTHFTVIRKL 616

Query: 62   HGNIFPLGFNKEVTDRNTKAGSNIVCAESSERALLNRLMLELHKLDTDVLVGHNISGFDL 121
             GNIFP+GFN EVTDRN KAGSN++C ESSERALLNRLML+LHK+D+DVLVGHNISGFDL
Sbjct: 617  DGNIFPMGFNTEVTDRNIKAGSNVLCVESSERALLNRLMLQLHKMDSDVLVGHNISGFDL 676

Query: 122  DVLLHRSQACKVPSSMWSKLGRLNRSTMPKLDRRKKTFGSGADPGIMSCIAGRLLCDTYL 181
            DVLLHRSQAC+VPSSMWSKLGRLNRSTMPKLDRR KTFG GADP IMSC+AGRLLCDTYL
Sbjct: 677  DVLLHRSQACRVPSSMWSKLGRLNRSTMPKLDRRGKTFGFGADPAIMSCVAGRLLCDTYL 736

Query: 182  SSRDLLKEVSYSLTELAKTQLNKFRKEVAPHGIPKMFQTAESLMELIEYGETDAWLSMEL 241
             SRDLLKEVSYSLT LAKTQLN+ RKEVAPH +PKMFQTA+SLMELIEYGETDAWLSMEL
Sbjct: 737  CSRDLLKEVSYSLTHLAKTQLNQSRKEVAPHEVPKMFQTAKSLMELIEYGETDAWLSMEL 796

Query: 242  MFHLSILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFSNYAKETK 301
            MF+LS+LPLTRQLTN+SGNLWGKTLQGARAQRVEYLLLH FH KKYIVPDKFSNYAKETK
Sbjct: 797  MFYLSVLPLTRQLTNLSGNLWGKTLQGARAQRVEYLLLHEFHKKKYIVPDKFSNYAKETK 856

Query: 302  LTKRRVTHGVXXXXXXXXXXXXXXYHNNASEIDHXXXXXXXXYAGGLVLEPKKGLYDKYI 361
            LTKRRVTHGV              YHN+ASE DH        YAGGLVLEPKKGLYDKYI
Sbjct: 857  LTKRRVTHGVDDGNFDDADINDANYHNDASESDHKKNKKAASYAGGLVLEPKKGLYDKYI 916

Query: 362  LLLDFNSLYPSIIQEYNICFTTVERSFDGSFPRLPSSTITGILPELLENLVKRRKSVKTW 421
            LLLDFNSLYPSIIQEYNICFTTVERS D SFPRLPSS  TG+LPELL+ LVK R+  KTW
Sbjct: 917  LLLDFNSLYPSIIQEYNICFTTVERSSDDSFPRLPSSKTTGVLPELLKKLVKLRREKKTW 976

Query: 422  MKTASGLKYQQFDIQQQALKLTAN 445
            MKTASGLK QQ DI+QQALKLTAN
Sbjct: 977  MKTASGLKRQQLDIEQQALKLTAN 1000


>Medtr3g096525.2 | DNA polymerase delta catalytic subunit | HC |
           chr3:44150897-44134651 | 20130731
          Length = 1086

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 153/365 (41%), Gaps = 71/365 (19%)

Query: 103 LHKLDTDVLVGHNISGFDLDVLLHRSQACKVPSSMWSKLGRLNRSTMPKLDRRKKTFGSG 162
           + ++D D+++G+NI  FDL  L+ R+   K+  + +  LGR+  S +    R K T  S 
Sbjct: 370 IREVDPDIIIGYNICKFDLPYLIERAATLKI--AEFPILGRIRNSRV----RVKDTTFSS 423

Query: 163 ADPGIMSC----IAGRLLCDTYLSSRDLLKEVSYSLTELAKTQLNKFRKEVAPHGIPKMF 218
              GI       + GR+  D     +   K  SYSL  ++   L++ +KE   H I    
Sbjct: 424 RQYGIRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSE-QKEDVHHSIISDL 482

Query: 219 QT--AESLMELIEYGETDAWLSMELMFHLSILPLTRQLTNISGNLWGKTLQGARAQRVEY 276
           Q   AE+   L  Y   DA+L   L+  L  +    ++  ++G      L   ++ +V  
Sbjct: 483 QNGNAETRRRLAVYCLKDAYLPQRLLDKLMFVYNYVEMARVTGVPISFLLSRGQSIKVLS 542

Query: 277 LLLHAFHAKKYIVPDKFSNYAKETKLTKRRVTHGVXXXXXXXXXXXXXXYHNNASEIDHX 336
            LL     K  ++P+     AK+                               SE    
Sbjct: 543 QLLRKAKQKNLVIPN-----AKQA-----------------------------GSE---- 564

Query: 337 XXXXXXXYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSFDGSFPRLP 396
                  + G  VLE + G Y+K I  LDF SLYPSI+  YN+C+ T+    +     +P
Sbjct: 565 ----QGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPENARMLNIP 620

Query: 397 SSTIT---------------GILPELLENLVKRRKSVKTWMKTASG-LKYQQFDIQQQAL 440
             ++                GILPE+LE L+  RK  K  +K A   L+    D +Q AL
Sbjct: 621 LESMNKTPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLAL 680

Query: 441 KLTAN 445
           K++AN
Sbjct: 681 KISAN 685


>Medtr3g096525.1 | DNA polymerase delta catalytic subunit | HC |
           chr3:44150897-44133139 | 20130731
          Length = 1086

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 153/365 (41%), Gaps = 71/365 (19%)

Query: 103 LHKLDTDVLVGHNISGFDLDVLLHRSQACKVPSSMWSKLGRLNRSTMPKLDRRKKTFGSG 162
           + ++D D+++G+NI  FDL  L+ R+   K+  + +  LGR+  S +    R K T  S 
Sbjct: 370 IREVDPDIIIGYNICKFDLPYLIERAATLKI--AEFPILGRIRNSRV----RVKDTTFSS 423

Query: 163 ADPGIMSC----IAGRLLCDTYLSSRDLLKEVSYSLTELAKTQLNKFRKEVAPHGIPKMF 218
              GI       + GR+  D     +   K  SYSL  ++   L++ +KE   H I    
Sbjct: 424 RQYGIRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSE-QKEDVHHSIISDL 482

Query: 219 QT--AESLMELIEYGETDAWLSMELMFHLSILPLTRQLTNISGNLWGKTLQGARAQRVEY 276
           Q   AE+   L  Y   DA+L   L+  L  +    ++  ++G      L   ++ +V  
Sbjct: 483 QNGNAETRRRLAVYCLKDAYLPQRLLDKLMFVYNYVEMARVTGVPISFLLSRGQSIKVLS 542

Query: 277 LLLHAFHAKKYIVPDKFSNYAKETKLTKRRVTHGVXXXXXXXXXXXXXXYHNNASEIDHX 336
            LL     K  ++P+     AK+                               SE    
Sbjct: 543 QLLRKAKQKNLVIPN-----AKQA-----------------------------GSE---- 564

Query: 337 XXXXXXXYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSFDGSFPRLP 396
                  + G  VLE + G Y+K I  LDF SLYPSI+  YN+C+ T+    +     +P
Sbjct: 565 ----QGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPENARMLNIP 620

Query: 397 SSTIT---------------GILPELLENLVKRRKSVKTWMKTASG-LKYQQFDIQQQAL 440
             ++                GILPE+LE L+  RK  K  +K A   L+    D +Q AL
Sbjct: 621 LESMNKTPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLAL 680

Query: 441 KLTAN 445
           K++AN
Sbjct: 681 KISAN 685