Miyakogusa Predicted Gene

Lj0g3v0213949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0213949.1 tr|I0YUK2|I0YUK2_9CHLO RBP11-like subunits of RNA
polymerase OS=Coccomyxa subellipsoidea C-169 PE=4
,49.44,2e-19,RBP11-like subunits of RNA polymerase,DNA-directed RNA
polymerase, RBP11-like; RNA_pol_L_2,NULL; no ,CUFF.13782.1
         (104 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g020830.1 | DNA-directed RNA polymerase | HC | chr7:649675...   173   3e-44
Medtr4g037750.1 | DNA-directed RNA polymerase II subunit RPB11-l...    56   8e-09
Medtr6g004540.1 | DNA-directed RNA polymerase II subunit RPB11-l...    49   7e-07

>Medtr7g020830.1 | DNA-directed RNA polymerase | HC |
          chr7:6496753-6500520 | 20130731
          Length = 115

 Score =  173 bits (438), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 77/97 (79%), Positives = 87/97 (89%)

Query: 1  MEHGSHSDESKSTFSLTDEDHTFANAIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGS+SD SKSTFSL DEDHTFAN++R+ LNQDPRVTFCGYSIPHPS+NRVN+RVQTTG
Sbjct: 1  MEHGSYSDLSKSTFSLVDEDHTFANSVRFILNQDPRVTFCGYSIPHPSENRVNVRVQTTG 60

Query: 61 EPAREVLKDSCQHMMLMCQHVKGTFDKAVNDFKSKKG 97
          +PA EVLKD CQ +MLMCQHV+ TF KAVNDFK+ K 
Sbjct: 61 DPASEVLKDGCQDLMLMCQHVRSTFGKAVNDFKTSKS 97


>Medtr4g037750.1 | DNA-directed RNA polymerase II subunit
          RPB11-like protein | HC | chr4:13948941-13951486 |
          20130731
          Length = 116

 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 33/50 (66%)

Query: 12 STFSLTDEDHTFANAIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGE 61
          ++F++  EDHT  N +R  L++DP V F GY +PHP   ++ IR+ TT +
Sbjct: 31 ASFTIEREDHTIGNILRMQLHKDPNVLFAGYKLPHPLQYKIIIRIHTTSQ 80


>Medtr6g004540.1 | DNA-directed RNA polymerase II subunit
          RPB11-like protein | HC | chr6:322224-323418 | 20130731
          Length = 76

 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 29/45 (64%)

Query: 12 STFSLTDEDHTFANAIRYTLNQDPRVTFCGYSIPHPSDNRVNIRV 56
          ++F++  EDHT  N +R  L++DP V F GY +PHP   ++  RV
Sbjct: 31 ASFTIEREDHTIGNVLRMQLHKDPNVLFAGYKLPHPLQYKIISRV 75