Miyakogusa Predicted Gene

Lj0g3v0213779.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0213779.1 tr|B9RD17|B9RD17_RICCO Actin-related protein 2/3
complex subunit 5 OS=Ricinus communis GN=RCOM_16088,76.19,6e-19,ARP2/3
COMPLEX 16 KD SUBUNIT (P16-ARC),ARP2/3 complex 16kDa subunit
(p16-Arc); Arp2/3 complex 16 kDa,CUFF.13758.1
         (135 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g006725.1 | actin-related protein 2/3 complex subunit 5 | ...   268   8e-73
Medtr1g112900.1 | actin-related protein 2/3 complex subunit 5 | ...   265   7e-72

>Medtr8g006725.1 | actin-related protein 2/3 complex subunit 5 | HC
           | chr8:899760-903948 | 20130731
          Length = 135

 Score =  268 bits (686), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 127/135 (94%), Positives = 132/135 (97%)

Query: 1   MAGAEGFVEADNAEAIIARIEHKSRKIESLLKQYKPVEALKTALEGTYAMTSDERCKSAH 60
           MAG+EGFVEADNAEAII RIEHK+RKIE+LLKQYKPVEALKTALEGTYAMTSDERCKSAH
Sbjct: 1   MAGSEGFVEADNAEAIITRIEHKTRKIEALLKQYKPVEALKTALEGTYAMTSDERCKSAH 60

Query: 61  WIAVHRALMAIKDVDGMLSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAG 120
           WI VHRA+MAIKDVDGMLSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTE+AG
Sbjct: 61  WIVVHRAIMAIKDVDGMLSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRFLTDTVNTV 135
            GCILRFLTDTVNTV
Sbjct: 121 HGCILRFLTDTVNTV 135


>Medtr1g112900.1 | actin-related protein 2/3 complex subunit 5 | HC
           | chr1:51191758-51188004 | 20130731
          Length = 135

 Score =  265 bits (678), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 125/135 (92%), Positives = 132/135 (97%)

Query: 1   MAGAEGFVEADNAEAIIARIEHKSRKIESLLKQYKPVEALKTALEGTYAMTSDERCKSAH 60
           MAG+EGFVEADNAEAII RIEHK+RKIE+LLKQ+KPVEALKTALEGTYAMTSDERCKSAH
Sbjct: 1   MAGSEGFVEADNAEAIITRIEHKTRKIETLLKQHKPVEALKTALEGTYAMTSDERCKSAH 60

Query: 61  WIAVHRALMAIKDVDGMLSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAG 120
           WI VHRA+MAIKDVDGMLSSL+PEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTE+AG
Sbjct: 61  WIVVHRAIMAIKDVDGMLSSLEPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTERAG 120

Query: 121 LGCILRFLTDTVNTV 135
            GCILRFLTDTVNTV
Sbjct: 121 HGCILRFLTDTVNTV 135