Miyakogusa Predicted Gene

Lj0g3v0212609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0212609.1 Non Characterized Hit- tr|I1IA29|I1IA29_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,96.08,3e-19,EUKARYOTIC TRANSLATION ELONGATION FACTOR 2,NULL;
TRANSLATION FACTOR,NULL; no description,NULL;
P-loo,NODE_51234_length_148_cov_192.520264.path1.1
         (52 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g069320.1 | translation elongation factor EF-2 subunit | H...   103   3e-23
Medtr2g069320.2 | translation elongation factor EF-2 subunit | H...   103   3e-23
Medtr1g048000.1 | translation elongation factor EF-2 subunit | H...   103   3e-23
Medtr2g069310.1 | translation elongation factor EF-2 subunit | H...   103   3e-23
Medtr2g069050.1 | translation elongation factor EF-2 subunit | H...   103   3e-23
Medtr3g097250.1 | GTP-binding elongation factor Tu family protei...    47   4e-06

>Medtr2g069320.1 | translation elongation factor EF-2 subunit | HC
          | chr2:28796997-28800462 | 20130731
          Length = 843

 Score =  103 bits (258), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/52 (96%), Positives = 51/52 (98%)

Query: 1  MVKFTAEELRRIMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52
          MVKFT +ELRRIMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG
Sbjct: 1  MVKFTVDELRRIMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52


>Medtr2g069320.2 | translation elongation factor EF-2 subunit | HC
          | chr2:28797077-28800462 | 20130731
          Length = 843

 Score =  103 bits (258), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/52 (96%), Positives = 51/52 (98%)

Query: 1  MVKFTAEELRRIMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52
          MVKFT +ELRRIMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG
Sbjct: 1  MVKFTVDELRRIMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52


>Medtr1g048000.1 | translation elongation factor EF-2 subunit | HC
          | chr1:18163348-18158836 | 20130731
          Length = 843

 Score =  103 bits (258), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/52 (96%), Positives = 51/52 (98%)

Query: 1  MVKFTAEELRRIMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52
          MVKFTA+ELRRIMD KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG
Sbjct: 1  MVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52


>Medtr2g069310.1 | translation elongation factor EF-2 subunit | HC
          | chr2:28791281-28795829 | 20130731
          Length = 843

 Score =  103 bits (258), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/52 (96%), Positives = 51/52 (98%)

Query: 1  MVKFTAEELRRIMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52
          MVKFTA+ELRRIMD KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG
Sbjct: 1  MVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52


>Medtr2g069050.1 | translation elongation factor EF-2 subunit | HC
          | chr2:28684491-28689296 | 20130731
          Length = 843

 Score =  103 bits (258), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/52 (96%), Positives = 51/52 (98%)

Query: 1  MVKFTAEELRRIMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52
          MVKFTA+ELRRIMD KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG
Sbjct: 1  MVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52


>Medtr3g097250.1 | GTP-binding elongation factor Tu family protein |
           HC | chr3:44591065-44578702 | 20130731
          Length = 678

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/31 (61%), Positives = 23/31 (74%)

Query: 18  NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQ 48
           NIRN S+IAH+DHGKSTL D L+   G + Q
Sbjct: 82  NIRNFSIIAHIDHGKSTLADKLLQVTGTVPQ 112