Miyakogusa Predicted Gene

Lj0g3v0212379.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0212379.1 Non Characterized Hit- tr|I1Q6U9|I1Q6U9_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,35.48,4e-16,BASIC HELIX-LOOP-HELIX (BHLH) FAMILY PROTEIN,NULL;
STEROL REGULATORY ELEMENT-BINDING PROTEIN,NULL,CUFF.13669.1
         (173 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g048350.1 | transcription factor BIM2-like protein | HC | ...   301   2e-82
Medtr5g048350.2 | transcription factor BIM2-like protein | HC | ...   301   2e-82
Medtr4g110040.2 | transcription factor BIM2-like protein | HC | ...   114   4e-26
Medtr4g110040.1 | transcription factor BIM2-like protein | HC | ...   114   5e-26
Medtr4g110040.3 | transcription factor BIM2-like protein | HC | ...   114   5e-26
Medtr7g017320.1 | transcription factor BIM2-like protein | HC | ...    57   7e-09

>Medtr5g048350.1 | transcription factor BIM2-like protein | HC |
           chr5:21194939-21186807 | 20130731
          Length = 335

 Score =  301 bits (770), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 144/173 (83%), Positives = 158/173 (91%)

Query: 1   MPWRNSHWRVQNFVGQPPAVRNGSGPVSPFPAKFDDSNVSISPTMLSGTQNMIDPDQSRD 60
           MPWRNSHWR QNFVGQPP V+NGSGPV PFP KFD+++V ISPTMLSG+ NMID D +RD
Sbjct: 116 MPWRNSHWRAQNFVGQPPIVKNGSGPVLPFPGKFDENSVGISPTMLSGSHNMIDHDPTRD 175

Query: 61  ILSKTAERQPDLVSKGIPLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQ 120
           I+ KTAERQPDL SKGIPLP+AMHANMSVPVRSDGV +HPLQGT+SDAQSTECP TSE  
Sbjct: 176 IVGKTAERQPDLASKGIPLPMAMHANMSVPVRSDGVLSHPLQGTVSDAQSTECPTTSEQL 235

Query: 121 NQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGNRA 173
           NQQD+LTVEGGTISISSVYSQGLLNNLTQALQSAGLDLS+A+ISVQI+LG RA
Sbjct: 236 NQQDDLTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSKANISVQIDLGKRA 288


>Medtr5g048350.2 | transcription factor BIM2-like protein | HC |
           chr5:21194898-21187182 | 20130731
          Length = 326

 Score =  301 bits (770), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 144/173 (83%), Positives = 158/173 (91%)

Query: 1   MPWRNSHWRVQNFVGQPPAVRNGSGPVSPFPAKFDDSNVSISPTMLSGTQNMIDPDQSRD 60
           MPWRNSHWR QNFVGQPP V+NGSGPV PFP KFD+++V ISPTMLSG+ NMID D +RD
Sbjct: 107 MPWRNSHWRAQNFVGQPPIVKNGSGPVLPFPGKFDENSVGISPTMLSGSHNMIDHDPTRD 166

Query: 61  ILSKTAERQPDLVSKGIPLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQ 120
           I+ KTAERQPDL SKGIPLP+AMHANMSVPVRSDGV +HPLQGT+SDAQSTECP TSE  
Sbjct: 167 IVGKTAERQPDLASKGIPLPMAMHANMSVPVRSDGVLSHPLQGTVSDAQSTECPTTSEQL 226

Query: 121 NQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGNRA 173
           NQQD+LTVEGGTISISSVYSQGLLNNLTQALQSAGLDLS+A+ISVQI+LG RA
Sbjct: 227 NQQDDLTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSKANISVQIDLGKRA 279


>Medtr4g110040.2 | transcription factor BIM2-like protein | HC |
           chr4:45819070-45811495 | 20130731
          Length = 438

 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/187 (42%), Positives = 107/187 (57%), Gaps = 18/187 (9%)

Query: 1   MPWRNSHWRVQNFVGQPPAVRNGSGPVSP---FPAKFDDSNVSISPTMLSGTQNMIDPDQ 57
           MPWRN+    ++F  QP +   GS P SP   F +K D+ N++ISPT   G  N ++   
Sbjct: 206 MPWRNNDRPAESF--QPRSANGGSNP-SPTLLFASKVDEKNITISPTTHGGIHN-VESSL 261

Query: 58  SRDILSKTAERQPDLVSKGIPLPLAMHANM--SVPVRSDGVPAHPLQGTLS-DAQSTECP 114
           S     KT +    + +K  P P++   N   S  +   G     L+  LS DA++T   
Sbjct: 262 STTTALKTIDHPSGITNKAFPSPISSQPNFLTSTQIGGSGGAVSQLRRRLSSDAENTNYQ 321

Query: 115 ATSEPQN--------QQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQ 166
            + E Q         ++ ELT+EGG ISISSVYSQGLL+ LTQALQS+G+DLSQASISVQ
Sbjct: 322 PSVESQTMTSTSEKLKEKELTIEGGAISISSVYSQGLLDTLTQALQSSGVDLSQASISVQ 381

Query: 167 INLGNRA 173
           I LG +A
Sbjct: 382 IELGKQA 388


>Medtr4g110040.1 | transcription factor BIM2-like protein | HC |
           chr4:45820056-45811459 | 20130731
          Length = 570

 Score =  114 bits (285), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/187 (42%), Positives = 107/187 (57%), Gaps = 18/187 (9%)

Query: 1   MPWRNSHWRVQNFVGQPPAVRNGSGPVSP---FPAKFDDSNVSISPTMLSGTQNMIDPDQ 57
           MPWRN+    ++F  QP +   GS P SP   F +K D+ N++ISPT   G  N ++   
Sbjct: 338 MPWRNNDRPAESF--QPRSANGGSNP-SPTLLFASKVDEKNITISPTTHGGIHN-VESSL 393

Query: 58  SRDILSKTAERQPDLVSKGIPLPLAMHANM--SVPVRSDGVPAHPLQGTLS-DAQSTECP 114
           S     KT +    + +K  P P++   N   S  +   G     L+  LS DA++T   
Sbjct: 394 STTTALKTIDHPSGITNKAFPSPISSQPNFLTSTQIGGSGGAVSQLRRRLSSDAENTNYQ 453

Query: 115 ATSEPQN--------QQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQ 166
            + E Q         ++ ELT+EGG ISISSVYSQGLL+ LTQALQS+G+DLSQASISVQ
Sbjct: 454 PSVESQTMTSTSEKLKEKELTIEGGAISISSVYSQGLLDTLTQALQSSGVDLSQASISVQ 513

Query: 167 INLGNRA 173
           I LG +A
Sbjct: 514 IELGKQA 520


>Medtr4g110040.3 | transcription factor BIM2-like protein | HC |
           chr4:45820056-45811459 | 20130731
          Length = 570

 Score =  114 bits (285), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/187 (42%), Positives = 107/187 (57%), Gaps = 18/187 (9%)

Query: 1   MPWRNSHWRVQNFVGQPPAVRNGSGPVSP---FPAKFDDSNVSISPTMLSGTQNMIDPDQ 57
           MPWRN+    ++F  QP +   GS P SP   F +K D+ N++ISPT   G  N ++   
Sbjct: 338 MPWRNNDRPAESF--QPRSANGGSNP-SPTLLFASKVDEKNITISPTTHGGIHN-VESSL 393

Query: 58  SRDILSKTAERQPDLVSKGIPLPLAMHANM--SVPVRSDGVPAHPLQGTLS-DAQSTECP 114
           S     KT +    + +K  P P++   N   S  +   G     L+  LS DA++T   
Sbjct: 394 STTTALKTIDHPSGITNKAFPSPISSQPNFLTSTQIGGSGGAVSQLRRRLSSDAENTNYQ 453

Query: 115 ATSEPQN--------QQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQ 166
            + E Q         ++ ELT+EGG ISISSVYSQGLL+ LTQALQS+G+DLSQASISVQ
Sbjct: 454 PSVESQTMTSTSEKLKEKELTIEGGAISISSVYSQGLLDTLTQALQSSGVDLSQASISVQ 513

Query: 167 INLGNRA 173
           I LG +A
Sbjct: 514 IELGKQA 520


>Medtr7g017320.1 | transcription factor BIM2-like protein | HC |
           chr7:5489064-5495510 | 20130731
          Length = 347

 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 85/191 (44%), Gaps = 31/191 (16%)

Query: 1   MPWRNSHWRVQNFVGQPPAVRNGSGPVSPFPAKFDDSNVSISPTMLSGTQNMIDPDQSRD 60
           +PWRN H   +N      A++NGS          D  N+ +SP+     QN I  D S  
Sbjct: 122 IPWRNHHGPSENTTDPSRAIQNGS---------VDGKNI-VSPSFPKNVQNPILSDPSTT 171

Query: 61  ILSKTAERQPDLVSKGIPLPLAMHANMSVPVRSDGVPAHPL----------------QGT 104
           I        P   ++ +PL + M  +M  PV S G+    +                Q  
Sbjct: 172 IPKGCT---PGSSTEVVPLTMQMRLDMFDPVVSGGMVTQQMLELPVSNPDMASNLQPQVW 228

Query: 105 LSDAQSTECPATSEPQNQQDELTVEGGTISISS--VYSQGLLNNLTQALQSAGLDLSQAS 162
           L          +     +Q+E+ ++ G+ S S    YSQ +L  LTQALQS+G+DLSQ +
Sbjct: 229 LGKPNKDNHIVSDNTLKEQEEMKIDSGSESDSISSAYSQRILGTLTQALQSSGVDLSQTN 288

Query: 163 ISVQINLGNRA 173
           +SV I++G R 
Sbjct: 289 VSVDIDVGRRT 299