Miyakogusa Predicted Gene

Lj0g3v0212309.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0212309.1 tr|I3SD25|I3SD25_LOTJA Proliferating cell nuclear
antigen OS=Lotus japonicus PE=2 SV=1,99.5,0,PCNACYCLIN,Proliferating
cell nuclear antigen, PCNA; SUBFAMILY NOT NAMED,NULL; PROLIFERATING
CELL NU,NODE_1379_length_757_cov_141.096436.path1.1
         (199 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g462130.1 | proliferating cell nuclear antigen large form ...   375   e-104

>Medtr3g462130.1 | proliferating cell nuclear antigen large form
           protein | HC | chr3:24779909-24776933 | 20130731
          Length = 266

 Score =  375 bits (963), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/199 (91%), Positives = 189/199 (94%)

Query: 1   MGMNLSNMSKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKISDFEMKLMDIDSEHLG 60
           MGMNL+NM+KMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKISDFEMKLMDIDSEHLG
Sbjct: 68  MGMNLNNMAKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKISDFEMKLMDIDSEHLG 127

Query: 61  IPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGTANIVCRQNTS 120
           IPEAEY AIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIG ANIVCRQNT+
Sbjct: 128 IPEAEYDAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGAANIVCRQNTT 187

Query: 121 VDKPEEATVIEMNEPVSLTFALRYMNSFTKATPLSSTVTISLSSELPVVVEYKIAEMGYV 180
           VDKP++ATVIEM EPVSL FALRYMNSFTKATPLSSTVTISLS+ELPVVVEYKIAEMGYV
Sbjct: 188 VDKPDDATVIEMKEPVSLQFALRYMNSFTKATPLSSTVTISLSNELPVVVEYKIAEMGYV 247

Query: 181 RFYLAPKIXXXXXXTKPQV 199
           RFYLAPKI      TKP+V
Sbjct: 248 RFYLAPKIEEDDEETKPEV 266