Miyakogusa Predicted Gene

Lj0g3v0211609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0211609.1 Non Characterized Hit- tr|C5XQY9|C5XQY9_SORBI
Putative uncharacterized protein Sb03g027630
OS=Sorghu,60.81,3e-19,RINGv,Zinc finger, RING-CH-type; PREDICTED
PROTEIN,NULL; MEMBRANE ASSOCIATED RING FINGER,NULL; no
de,NODE_51376_length_471_cov_106.885353.path2.1
         (105 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g087920.1 | zinc finger protein | HC | chr3:39850047-39844...   181   2e-46
Medtr4g113520.1 | zinc finger protein | HC | chr4:46675210-46679...   110   2e-25
Medtr2g105850.1 | zinc finger protein | HC | chr2:45699219-45696...   106   6e-24
Medtr2g105850.2 | zinc finger protein | HC | chr2:45699264-45697...    67   4e-12
Medtr3g013530.1 | RING-variant domain protein | LC | chr3:366535...    52   1e-07
Medtr5g040650.1 | RING/FYVE/PHD zinc finger protein | HC | chr5:...    47   5e-06
Medtr5g040650.2 | RING/FYVE/PHD zinc finger protein | HC | chr5:...    47   6e-06

>Medtr3g087920.1 | zinc finger protein | HC | chr3:39850047-39844555
           | 20130731
          Length = 325

 Score =  181 bits (458), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/107 (88%), Positives = 99/107 (92%), Gaps = 2/107 (1%)

Query: 1   MADHS--DSSPLVPPQPLSDAFEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYV 58
           MADHS  D+SPLVPP P  D   IDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYV
Sbjct: 1   MADHSESDTSPLVPPLPPVDPSSIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYV 60

Query: 59  HRDCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
           HR+CLDHWR++KEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF
Sbjct: 61  HRECLDHWRSVKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 107


>Medtr4g113520.1 | zinc finger protein | HC | chr4:46675210-46679677
           | 20130731
          Length = 312

 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 73/118 (61%), Gaps = 20/118 (16%)

Query: 5   SDSSPLVPPQPLSDAFEIDLE--AGPSEQIQ------------CRICLETDGR---DFIA 47
           SDS PL+  Q   D  E D    +G S +I+            CRICLE+D     + I+
Sbjct: 17  SDSDPLLAHQ---DEVEDDDSHGSGNSNEIKDQEDIEAGSLPCCRICLESDSDPEDELIS 73

Query: 48  PCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
           PC CKGT ++VHR CLDHWR++KEGFAF+HCTTCKA +HLRV    D  WR +KFR F
Sbjct: 74  PCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVETYEDNSWRKIKFRLF 131


>Medtr2g105850.1 | zinc finger protein | HC | chr2:45699219-45696892
           | 20130731
          Length = 246

 Score =  106 bits (264), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 46/73 (63%), Positives = 55/73 (75%)

Query: 33  QCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVA 92
           QCRICL+  G D IAPC CKGT KYVHR CLD+WR+ KEGFAF+HCT C+A + +R +V 
Sbjct: 58  QCRICLDLGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRALFIIRPNVP 117

Query: 93  ADRKWRTLKFRFF 105
            DR W  LKF+F 
Sbjct: 118 KDRWWLRLKFQFL 130


>Medtr2g105850.2 | zinc finger protein | HC |
          chr2:45699264-45697009 | 20130731
          Length = 197

 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 27/38 (71%), Positives = 30/38 (78%)

Query: 33 QCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAIK 70
          QCRICL+  G D IAPC CKGT KYVHR CLD+WR+ K
Sbjct: 58 QCRICLDLGGEDLIAPCHCKGTQKYVHRSCLDNWRSTK 95


>Medtr3g013530.1 | RING-variant domain protein | LC |
           chr3:3665355-3666902 | 20130731
          Length = 261

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/26 (80%), Positives = 22/26 (84%)

Query: 42  GRDFIAPCKCKGTSKYVHRDCLDHWR 67
           GRDFIA CKCKG SKYVH  CLDHW+
Sbjct: 135 GRDFIAHCKCKGASKYVHLHCLDHWK 160


>Medtr5g040650.1 | RING/FYVE/PHD zinc finger protein | HC |
           chr5:17869053-17863995 | 20130731
          Length = 290

 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 30  EQIQCRICLETDG-RDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYH 86
           + ++CRIC E D   +   PC C G+ KY HR C+ HW   K       C  C  PY 
Sbjct: 66  QMVECRICQEEDSVSNLETPCACSGSLKYAHRKCVQHWCNEKGDIT---CEICHQPYQ 120


>Medtr5g040650.2 | RING/FYVE/PHD zinc finger protein | HC |
           chr5:17868904-17864467 | 20130731
          Length = 257

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 30  EQIQCRICLETDG-RDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYH 86
           + ++CRIC E D   +   PC C G+ KY HR C+ HW   K       C  C  PY 
Sbjct: 66  QMVECRICQEEDSVSNLETPCACSGSLKYAHRKCVQHWCNEKGDIT---CEICHQPYQ 120