Miyakogusa Predicted Gene

Lj0g3v0210959.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0210959.1 Non Characterized Hit- tr|D7T6B1|D7T6B1_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,67.12,3e-17,
,CUFF.13550.1
         (75 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g124250.1 | hypothetical protein | HC | chr4:51307615-5130...   120   2e-28
Medtr2g044940.1 | hypothetical protein | HC | chr2:19543883-1954...   113   3e-26

>Medtr4g124250.1 | hypothetical protein | HC |
          chr4:51307615-51308961 | 20130731
          Length = 77

 Score =  120 bits (302), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/76 (78%), Positives = 67/76 (88%), Gaps = 3/76 (3%)

Query: 3  SNWKKTITTPFKKACTFINQQKT-RDQKKSQTEQERGVMDLQGEVMACGYEDVQVMWSIL 61
          ++WKKTITTPFKKACTF  +Q T RD KKSQTEQER +MDLQGEVMACGYEDVQVMWS+L
Sbjct: 2  ASWKKTITTPFKKACTFFKEQPTTRDPKKSQTEQERRIMDLQGEVMACGYEDVQVMWSML 61

Query: 62 DRSKSTS--CNMASSS 75
          DRSKST+  CN+ SSS
Sbjct: 62 DRSKSTATECNITSSS 77


>Medtr2g044940.1 | hypothetical protein | HC |
          chr2:19543883-19543107 | 20130731
          Length = 74

 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 53/73 (72%), Positives = 60/73 (82%), Gaps = 1/73 (1%)

Query: 3  SNWKKTITTPFKKACTFINQQKTRDQKKSQ-TEQERGVMDLQGEVMACGYEDVQVMWSIL 61
          ++WKKTI +PFKKACTF NQQ  R+ KKSQ  EQE   MDL GEVMACGYEDV VMWSIL
Sbjct: 2  ASWKKTIASPFKKACTFFNQQPPREHKKSQIAEQENRGMDLHGEVMACGYEDVHVMWSIL 61

Query: 62 DRSKSTSCNMASS 74
          D+SKST+CN+ SS
Sbjct: 62 DKSKSTACNITSS 74