Miyakogusa Predicted Gene

Lj0g3v0210699.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0210699.1 tr|B9MZV3|B9MZV3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_595599 PE=4
SV=1,58.42,2e-17,seg,NULL,CUFF.13534.1
         (347 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g113510.1 | cyclin family protein, putative | HC | chr7:46...   202   4e-52
Medtr7g113510.2 | cyclin family protein, putative | HC | chr7:46...   202   4e-52
Medtr1g082940.1 | microtubule-binding protein TANGLED protein, p...   122   6e-28

>Medtr7g113510.1 | cyclin family protein, putative | HC |
           chr7:46773374-46771055 | 20130731
          Length = 429

 Score =  202 bits (514), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 127/221 (57%), Positives = 149/221 (67%), Gaps = 32/221 (14%)

Query: 1   MSLPAMLVGETVGEILQATQFAREIVSAVGNKFASEDPKTPMSQRPNQKASPESNTQLKA 60
           MSLPAM VGETV EILQA+QFAREIVS+VG K A EDPKTP+S+   +K   E NTQL+A
Sbjct: 102 MSLPAMFVGETVIEILQASQFAREIVSSVGAKSAVEDPKTPLSRNSYKKEDSE-NTQLRA 160

Query: 61  RRKKEKQTK--NDSPP-SLQRARSRINFKVSPP-KVRELD--LQNHRYLANRVSPRNKPW 114
           +R+KEKQ K  +DSPP   QR RSRINFKVSPP KV++LD   + ++YLANRVSPRN+PW
Sbjct: 161 KRRKEKQNKQQSDSPPLPSQRVRSRINFKVSPPKKVKDLDKEKEKNKYLANRVSPRNRPW 220

Query: 115 ARKTVLFPNPLFLXXXXXXXXXXXXXFCKTRSPIISRNRG--TPHKFLIKTXXXXXXXXX 172
           ARKTVLFPNPLF              FCKTRSP+ISRNR   TPHKF IK+         
Sbjct: 221 ARKTVLFPNPLF-----SSTSSHQQQFCKTRSPVISRNRATTTPHKFRIKS--------- 266

Query: 173 XXXXXXXXHVSLSPTRPAGLNKSSPTRNR-GTPHKFLIKSP 212
                   H  L  T P  +  ++P + R  +PHKFLIKSP
Sbjct: 267 -------PHKFLIET-PNSVTSTTPHKFRILSPHKFLIKSP 299


>Medtr7g113510.2 | cyclin family protein, putative | HC |
           chr7:46773374-46771055 | 20130731
          Length = 344

 Score =  202 bits (514), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 127/221 (57%), Positives = 149/221 (67%), Gaps = 32/221 (14%)

Query: 1   MSLPAMLVGETVGEILQATQFAREIVSAVGNKFASEDPKTPMSQRPNQKASPESNTQLKA 60
           MSLPAM VGETV EILQA+QFAREIVS+VG K A EDPKTP+S+   +K   E NTQL+A
Sbjct: 17  MSLPAMFVGETVIEILQASQFAREIVSSVGAKSAVEDPKTPLSRNSYKKEDSE-NTQLRA 75

Query: 61  RRKKEKQTK--NDSPP-SLQRARSRINFKVSPP-KVRELD--LQNHRYLANRVSPRNKPW 114
           +R+KEKQ K  +DSPP   QR RSRINFKVSPP KV++LD   + ++YLANRVSPRN+PW
Sbjct: 76  KRRKEKQNKQQSDSPPLPSQRVRSRINFKVSPPKKVKDLDKEKEKNKYLANRVSPRNRPW 135

Query: 115 ARKTVLFPNPLFLXXXXXXXXXXXXXFCKTRSPIISRNRG--TPHKFLIKTXXXXXXXXX 172
           ARKTVLFPNPLF              FCKTRSP+ISRNR   TPHKF IK+         
Sbjct: 136 ARKTVLFPNPLF-----SSTSSHQQQFCKTRSPVISRNRATTTPHKFRIKS--------- 181

Query: 173 XXXXXXXXHVSLSPTRPAGLNKSSPTRNR-GTPHKFLIKSP 212
                   H  L  T P  +  ++P + R  +PHKFLIKSP
Sbjct: 182 -------PHKFLIET-PNSVTSTTPHKFRILSPHKFLIKSP 214


>Medtr1g082940.1 | microtubule-binding protein TANGLED protein,
           putative | HC | chr1:36901830-36904540 | 20130731
          Length = 258

 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/210 (43%), Positives = 105/210 (50%), Gaps = 73/210 (34%)

Query: 1   MSLPAMLVGETVGEILQATQFAREIVSAVGNKFAS-EDPKTPMSQRPNQKASPESNTQLK 59
           MSLPAMLVGET+GEILQA+QFAREIVS VG+K  S EDPKTPMSQRP++K + E NTQLK
Sbjct: 70  MSLPAMLVGETLGEILQASQFAREIVSTVGDKTPSKEDPKTPMSQRPSKKINLE-NTQLK 128

Query: 60  ARRKKEKQTKNDSPPSLQRARSRINFKVSPPKVRELDLQNHRYLANRVSPRNKPWARKTV 119
                                                          VSPRN+ WA+KT+
Sbjct: 129 -----------------------------------------------VSPRNRTWAKKTI 141

Query: 120 LFPNPLFLXXXXXXXXXXXXXFCKTRSPIISRNRG--TPHKFLIKTXXXXXXXXXXXXXX 177
           LFPNPLF               C +     SRNRG  TPHKFLIK               
Sbjct: 142 LFPNPLF-----------KSTHCSS-----SRNRGPTTPHKFLIKFPPSNSKVKIKSTTI 185

Query: 178 XXXHVSLSPTRPAGLNKSSPTRNRGTPHKF 207
               VS+SPTR A L+K+SP   R T  KF
Sbjct: 186 ----VSISPTRLASLSKNSP--KRSTAAKF 209



 Score = 76.3 bits (186), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 66/106 (62%), Gaps = 5/106 (4%)

Query: 244 TRIRG--TPHKFLIKSPTLTSKIQVRSPRALSISPIRPANLGRNSQKXXXXXXXXXXXXX 301
           +R RG  TPHKFLIK P   SK++++S   +SISP R A+L +NS K             
Sbjct: 156 SRNRGPTTPHKFLIKFPPSNSKVKIKSTTIVSISPTRLASLSKNSPKRSTAAKFRRSFSP 215

Query: 302 XXIASRLASLSPLKRKKTVQKSDGLFVSGLKQRPASTVRLNTVRRV 347
             +A+RL  +SPL+ KKT QKSDG+ VSGLKQ P ST++    RR+
Sbjct: 216 SRLATRL--VSPLRSKKTAQKSDGI-VSGLKQHPVSTIQFPANRRI 258