Miyakogusa Predicted Gene

Lj0g3v0209969.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0209969.2 Non Characterized Hit- tr|I1JLP3|I1JLP3_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,75.09,0,Chromo
domain-like,Chromo domain-like; Ribonuclease H-like,Ribonuclease
H-like domain; Chromo,Chromo,CUFF.13498.2
         (284 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g029555.1 | hypothetical protein | LC | chr7:10634063-1063...   124   1e-28
Medtr6g045307.1 | IPP transferase | LC | chr6:16235075-16228160 ...    89   6e-18
Medtr1478s0010.1 | hypothetical protein | HC | scaffold1478:1661...    86   6e-17
Medtr1g050845.1 | B3 DNA-binding domain protein | LC | chr1:1975...    84   1e-16
Medtr0011s0100.1 | Pol polyprotein/retrotransposon, putative | L...    77   1e-14
Medtr0113s0060.1 | chromo domain protein | LC | scaffold0113:194...    73   2e-13
Medtr6g463630.1 | tyrosine kinase family protein | LC | chr6:220...    73   3e-13
Medtr0037s0030.1 | chromo domain protein | LC | scaffold0037:235...    69   5e-12
Medtr5g049330.1 | chromo domain protein, putative | LC | chr5:21...    64   2e-10
Medtr3g092800.1 | hypothetical protein | LC | chr3:42427916-4242...    62   4e-10
Medtr8g061250.1 | hypothetical protein | LC | chr8:21066457-2106...    58   8e-09
Medtr4g044373.1 | hypothetical protein | LC | chr4:15044558-1504...    58   9e-09
Medtr4g051153.1 | hypothetical protein | LC | chr4:18163336-1816...    53   4e-07
Medtr3g032950.1 | hypothetical protein | LC | chr3:10429405-1042...    49   4e-06

>Medtr7g029555.1 | hypothetical protein | LC |
           chr7:10634063-10633011 | 20130731
          Length = 251

 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/156 (46%), Positives = 103/156 (66%)

Query: 25  KPKMWVDWLSWAEFWFNSTYNVSAGMTPFKALYGRDPPTLIKGSTFTSKVEAVNQLLTAR 84
           +P  W  +L WAE+ +N+T + S G +P + ++G+ PPTL +    +S  EAV   L  R
Sbjct: 13  QPNQWGKYLPWAEWHYNTTVHDSTGFSPLQVVFGKPPPTLQQYVEGSSTTEAVQSELMTR 72

Query: 85  DLILQELQQNLLKAQELMKVQANKHRRPVEFAVGDWVFLKLQPYKLRSLAHRPVAKLSPK 144
           D ILQ+L+Q LLKAQ+ MK  A+K R P  F VGD V LKL+P++  S+A   V KL+ +
Sbjct: 73  DAILQKLKQKLLKAQQTMKDFADKRRIPHPFKVGDLVLLKLRPHRQVSVAGHRVNKLAKR 132

Query: 145 FYGPYKVLERIGSVAYKLELPAHAKIHPVFHVSLLK 180
           +Y P+ +L  IG VA++L LPA ++IHPVFH S LK
Sbjct: 133 YYAPFPILRSIGDVAFQLALPATSRIHPVFHASQLK 168


>Medtr6g045307.1 | IPP transferase | LC | chr6:16235075-16228160 |
           20130731
          Length = 1039

 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 14/149 (9%)

Query: 47  SAGMTPFKALYGRDPPTLI----KGSTFTSKVEAVNQLLTARDLILQELQQNLLKAQELM 102
           S GM PF+ALYGR   T +     G +    +E V +      +I    Q+ +  +Q   
Sbjct: 483 SIGMAPFEALYGRRCRTPLCWFESGESALLGLEVVQETTEKVKII----QEKMKASQSRQ 538

Query: 103 KVQANKHRRPVEFAVGDWVFLKLQPYKL--RSLAHRPVAKLSPKFYGPYKVLERIGSVAY 160
           K   +K R+ +EF VGD VF ++ P     R+L  R   KL+P+F GP+ V+E++G VAY
Sbjct: 539 KSYHDKRRKDIEFQVGDHVFFRVNPVTGVGRALKCR---KLTPRFVGPFDVIEKVGVVAY 595

Query: 161 KLEL-PAHAKIHPVFHVSLLKKASHSVPH 188
           ++ L P+ + +H VFHVS L+K  H   H
Sbjct: 596 RIALPPSLSNLHNVFHVSQLRKYVHDASH 624


>Medtr1478s0010.1 | hypothetical protein | HC |
           scaffold1478:1661-863 | 20130731
          Length = 219

 Score = 85.5 bits (210), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 88/207 (42%), Gaps = 61/207 (29%)

Query: 58  GRDPPTLIKGSTFTSKVEAVNQLLTARDLILQELQQNLLKAQELMKVQANKHRRPVEFAV 117
           GR PP L+      ++VE V Q L  RD  L++L+Q                        
Sbjct: 35  GRKPPVLMHFVEGETRVETVAQELRDRDEALRQLKQ------------------------ 70

Query: 118 GDWVFLKLQPYKLRSLAHRPVAKLSPKFYGPYKVLERIGSVAYKLELPAHAKIHPVFHVS 177
                        +S+  R   KL+P+F+GPY+V++ IG VAYKL+L A + IHP FHVS
Sbjct: 71  -------------QSMVQRIHQKLAPRFFGPYQVIKNIGQVAYKLQLHAESIIHPTFHVS 117

Query: 178 LLKKASHSVPHXXXXXXXXXXXXXXQVQPAEILQWREDSEGNLEVLVHWDNLPSCEDSWE 237
            LKKA  +                    P+           +LE+ +  DN+   + +WE
Sbjct: 118 QLKKALGNYTLLTEL-------------PS-----------SLEISLMGDNIKENDATWE 153

Query: 238 VADQLQKAFPQFPLEDKVALLGGSIDR 264
               L+  FP   LEDK    GG  DR
Sbjct: 154 EELLLKSQFPDLSLEDKTVYDGGGDDR 180


>Medtr1g050845.1 | B3 DNA-binding domain protein | LC |
           chr1:19756003-19762298 | 20130731
          Length = 830

 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/162 (35%), Positives = 84/162 (51%), Gaps = 10/162 (6%)

Query: 12  RSLETYLRCFVGPKPKMWVDWLSWAEFWFNSTYNVSAGMTPFKALYGRDPPTLI----KG 67
           +SLE  LR  V  +   W   L   EF +N++Y+ S GMTPF+ALYGR   T +     G
Sbjct: 573 QSLEDLLRVCVLEQGGTWDSHLPLIEFMYNNSYHSSIGMTPFEALYGRRCRTPLCWFESG 632

Query: 68  STFTSKVEAVNQLLTARDLILQELQQNLLKAQELMKVQANKHRRPVEFAVGDWVFLKLQP 127
            +     + V Q      LI    Q+ +   Q   K   +K R+ +EF  GD VFL++  
Sbjct: 633 ESVVLGPDIVQQTTEKVKLI----QEKMKALQSRQKSYHDKRRKDLEFQEGDHVFLRVTL 688

Query: 128 YKLRSLAHRPVAKLSPKFYGPYKVLERIGSVAYK-LELPAHA 168
                 A +   KL+P+F GPY++ ERIG+VAY+ +  P+H 
Sbjct: 689 VIGVGRALKS-KKLTPRFIGPYQISERIGTVAYRYVSDPSHV 729


>Medtr0011s0100.1 | Pol polyprotein/retrotransposon, putative | LC |
           scaffold0011:121977-125423 | 20130731
          Length = 235

 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 13/169 (7%)

Query: 91  LQQNLLKAQELMKVQANKHRRPVEFAVGDWVFLKLQPYKL--RSLAHRPVAKLSPKFYGP 148
           +Q+ +  +Q   K   +K R+ +EF VGD VFL++ P     R+L  R   KL+P F GP
Sbjct: 2   IQEKMKASQSRQKSYHDKRRKDIEFQVGDHVFLRVNPVTGVGRALKCR---KLTPHFVGP 58

Query: 149 YKVLERIGSVAYKLEL-PAHAKIHPVFHVSLLKKASHSVPH-XXXXXXXXXXXXXXQVQP 206
           + V+E++G VAY++ L P+ + +H VFHVS L+K  H + H               +  P
Sbjct: 59  FNVIEKVGDVAYRIALPPSLSNLHNVFHVSQLRKYVHDLSHGIQVDDVEVRDNLTVETWP 118

Query: 207 A--EILQWREDSEGNLEVLVH--WDNLPSCEDSWEVADQLQKAFPQ-FP 250
              E   W+    G   VLV   W   P    +WE   +++ ++P+ FP
Sbjct: 119 VRIECRDWKR-LRGKEIVLVKVIWVGQPGESATWEAESRMKVSYPELFP 166


>Medtr0113s0060.1 | chromo domain protein | LC |
           scaffold0113:19492-15456 | 20130731
          Length = 452

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/102 (45%), Positives = 62/102 (60%), Gaps = 11/102 (10%)

Query: 94  NLLKA-QELMKVQANKHRRPVEFAVGDWVFLKLQPYKL--RSLAHRPVAKLSPKFYGPYK 150
            L+KA Q   K   +K R+ +EF  GD VFL++ P     R+L  R   KL+PKF GPY+
Sbjct: 212 ELMKASQSRQKSYHDKRRKALEFQEGDHVFLRVTPLTGVGRALKSR---KLTPKFIGPYQ 268

Query: 151 VLERIGSVAYKLELPAH-AKIHPVFHVSLLKK----ASHSVP 187
           + ER+G VAY + LP H + +H VFHVS L+K     SH +P
Sbjct: 269 ISERVGIVAYSVGLPPHLSNLHDVFHVSQLRKYVADPSHVIP 310


>Medtr6g463630.1 | tyrosine kinase family protein | LC |
           chr6:22088447-22085198 | 20130731
          Length = 572

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 51/78 (65%)

Query: 71  TSKVEAVNQLLTARDLILQELQQNLLKAQELMKVQANKHRRPVEFAVGDWVFLKLQPYKL 130
           TS VEAV+  L +R+ ILQ L+  L KAQ+ MK  A++HR P  F VGDWVF K++PY  
Sbjct: 15  TSLVEAVDVELNSREHILQVLRNKLPKAQDNMKQYADRHRIPHTFQVGDWVFFKIRPYWK 74

Query: 131 RSLAHRPVAKLSPKFYGP 148
            S+    + KLS  +YGP
Sbjct: 75  TSVVGHRMNKLSKHYYGP 92


>Medtr0037s0030.1 | chromo domain protein | LC |
           scaffold0037:23550-24583 | 20130731
          Length = 223

 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 6/82 (7%)

Query: 110 RRPVEFAVGDWVFLKLQPYKL--RSLAHRPVAKLSPKFYGPYKVLERIGSVAYKLEL-PA 166
           R+ +EF VGD VFL++ P     R+L  R   KL+P F GP+ V+E++G VAY++ L P+
Sbjct: 2   RKDIEFHVGDHVFLRVNPVTGVGRALKCR---KLTPHFIGPFDVIEKVGIVAYRIALPPS 58

Query: 167 HAKIHPVFHVSLLKKASHSVPH 188
            + +H VFHVS L+K  H V H
Sbjct: 59  LSNLHNVFHVSQLRKFVHDVSH 80


>Medtr5g049330.1 | chromo domain protein, putative | LC |
           chr5:21623005-21620531 | 20130731
          Length = 252

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 6/87 (6%)

Query: 98  AQELMKVQANKHRRPVEFAVGDWVFLKLQPYKL--RSLAHRPVAKLSPKFYGPYKVLERI 155
           AQ   K  +++ RRP+EF   D +FL++       R++  R   KL+PKF  PY++L RI
Sbjct: 4   AQSRQKNYSDRRRRPIEFEESDHIFLRVASTTEVGRAIKSR---KLTPKFIVPYQILRRI 60

Query: 156 GSVAYKLELPAH-AKIHPVFHVSLLKK 181
           G  AY++ LP   + IH VFHVS L+K
Sbjct: 61  GPDAYQIALPPFLSNIHDVFHVSQLRK 87


>Medtr3g092800.1 | hypothetical protein | LC |
           chr3:42427916-42428276 | 20130731
          Length = 102

 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 41/56 (73%), Gaps = 1/56 (1%)

Query: 98  AQELMKVQANKHRRPVEFAVGDWVFLKLQPYKLRSLAHRPVAKLSPKFYGPYKVLE 153
            Q  MKVQANKHR+ V +AV +WV LKL  YK +SLA +   KLSP+FYGPY++ +
Sbjct: 13  TQNEMKVQANKHRKDVTYAVRNWVNLKLW-YKPKSLAKKINEKLSPRFYGPYQITK 67


>Medtr8g061250.1 | hypothetical protein | LC |
           chr8:21066457-21065485 | 20130731
          Length = 169

 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 15/76 (19%)

Query: 87  ILQELQQNLLKAQELMKVQANKHRRPVEFAVGDWVFLKLQPYKLRSLAHRPVAKLSPKFY 146
           I+ + ++    AQ+ MK Q +KHRR V+ AVGDWV         R+       KLSP+FY
Sbjct: 83  IVSDREKVFFMAQQRMKKQTDKHRRDVQPAVGDWV---------RN------EKLSPRFY 127

Query: 147 GPYKVLERIGSVAYKL 162
           GPY VLE+I  VAY +
Sbjct: 128 GPYLVLEKIRPVAYSI 143


>Medtr4g044373.1 | hypothetical protein | LC |
           chr4:15044558-15046075 | 20130731
          Length = 159

 Score = 58.2 bits (139), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 39/57 (68%)

Query: 124 KLQPYKLRSLAHRPVAKLSPKFYGPYKVLERIGSVAYKLELPAHAKIHPVFHVSLLK 180
           +LQPY   ++  R   KLS  ++GP+ VL  IG +AY+L+LP + +IHPV HVS LK
Sbjct: 51  RLQPYLQNTVKRRISKKLSKSYFGPFTVLCCIGDLAYELDLPQNLRIHPVIHVSQLK 107


>Medtr4g051153.1 | hypothetical protein | LC |
           chr4:18163336-18164659 | 20130731
          Length = 187

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/38 (57%), Positives = 31/38 (81%), Gaps = 1/38 (2%)

Query: 140 KLSPKFYGPYKVLERIGSVAYKLELPAH-AKIHPVFHV 176
           KL+PKF GPY++ ER+G+VAY++ LP H + +H VFHV
Sbjct: 89  KLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHV 126


>Medtr3g032950.1 | hypothetical protein | LC |
           chr3:10429405-10429139 | 20130731
          Length = 88

 Score = 49.3 bits (116), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 133 LAHRPVAKLSPK---FYGPYKVLERIGSVAYKLELPAHAKIHPVFHVSLLKKASHSV 186
           + H    KL PK      PYK+L+RI  V Y +ELP  A IH +FHVS LK  +  V
Sbjct: 1   MCHTQFHKLCPKSSMILSPYKILDRIRQVFYPIELPLAANIHNIFHVSQLKSCAQPV 57