Miyakogusa Predicted Gene
- Lj0g3v0208729.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0208729.1 Non Characterized Hit- tr|B6TCD4|B6TCD4_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,52.5,2e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; COILIN
P80,Coilin,CUFF.14321.1
(599 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g086550.1 | hypothetical protein | LC | chr3:39228875-3922... 230 3e-60
Medtr3g086550.2 | hypothetical protein | LC | chr3:39228875-3922... 213 6e-55
>Medtr3g086550.1 | hypothetical protein | LC |
chr3:39228875-39222626 | 20130731
Length = 782
Score = 230 bits (587), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/224 (57%), Positives = 144/224 (64%), Gaps = 24/224 (10%)
Query: 398 TFCWNGITSKKKGQKWGKERISSWKQDDHENSSQEWRAAQKAEREHLSNPVDFEKLTPYT 457
T WNG SK QKWGKE+ S+ KQDD E SSQ+ Q A ++ + VDFEKLTPYT
Sbjct: 513 TVQWNGTISK--DQKWGKEKTSAHKQDDCEQSSQDRPTDQNAGKKRTFDAVDFEKLTPYT 570
Query: 458 SLPKEGDVIAYRLIELSSSWTPELSSFRVGKISQYDAKSNRICLEPVSEFPFVLEEKTDQ 517
LPKEG+VIAYRLIELS SWTPELSSFRVGK +QYD+KSNRI L+PVSEFPF +K D
Sbjct: 571 DLPKEGNVIAYRLIELSESWTPELSSFRVGKTTQYDSKSNRIWLQPVSEFPFDFWKKIDD 630
Query: 518 ETSSGQP---DPPLYQEDGSLEVEYTSLADVRMVKHXXXXXXXXXXXXXXLVNPPKATNG 574
G P DP YQEDGSLE++Y SLADVR++KH V P KATN
Sbjct: 631 MDEDGSPSQSDPSPYQEDGSLEIDYASLADVRIIKHGHSDLATVVAHSDAFVTPTKATNN 690
Query: 575 STDEKP-------------------AKENGGVSVWDEINEALNA 599
STDEKP AKENG V+VWDEINEAL A
Sbjct: 691 STDEKPADNETAAGSSKPQIEGHVTAKENGEVNVWDEINEALKA 734
Score = 187 bits (476), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/166 (59%), Positives = 118/166 (71%), Gaps = 10/166 (6%)
Query: 1 MAAPARLRLLFEDRHMLSKSKTKEGLNRCWFLLKPQHTTISDLTSNLLDAFRLHRTCPGG 60
M+ RLRLLF+DR+MLSKSK KEGL CWFLLKP TTISDL S++L FRLHR CP G
Sbjct: 14 MSNKVRLRLLFDDRNMLSKSKKKEGLKCCWFLLKPHLTTISDLASHILAVFRLHRNCPDG 73
Query: 61 IILSMDGFVLPSFESTCILKDNDIVWVKRKGSVSTDDKPALLPPLSCGRQSIDLPKLLSI 120
I LSMDGFVLPSFESTCILKD DIV VK+KGS+ T KPA+LP + Q I+LPKLL+I
Sbjct: 74 ITLSMDGFVLPSFESTCILKDKDIVCVKKKGSMLTGSKPAMLPSETHENQLIELPKLLAI 133
Query: 121 EGVQEETPEHLRIEQEETRGDETASGEDEDEQIGSGVVCVESKLDG 166
EG QE+ E+ I +++ ++ + VV VESKLDG
Sbjct: 134 EGFQEKREEYETISEDDDDDNDQS----------EDVVNVESKLDG 169
Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 131/215 (60%), Gaps = 21/215 (9%)
Query: 244 TTDNLALITEVHKDESGRFKGHIHQQSSVAEKD-NKSS------NDQSEPTNDKTRFLQP 296
TT+NLA I E H++E+G K H+++S+A+KD KSS ND+S T+++TR LQP
Sbjct: 194 TTENLADIPEAHEEENGSVKDCTHRKASLAKKDIGKSSTLSCQKNDKSGSTSEETRSLQP 253
Query: 297 QDESETKKVPXXXXXXXXXXXX-------------XXXXXXXXXXXXNTSPVLEKD-EQL 342
QDE E KK+P + S VLEKD +Q+
Sbjct: 254 QDEGEPKKLPSRSARRKKAKRKWLRELKLKEKEKEKEKENENEKDKLHPSQVLEKDDQQI 313
Query: 343 PIKDNNCKVSDVNQQXXXXXXXXDDVIPVEIRPGHIRFQPLRKDQEVPQNQFPVETFCWN 402
PIKDNN KVSDV QQ DD++PVEIRPGHIRFQP KD P+NQ PV+TF WN
Sbjct: 314 PIKDNNGKVSDVRQQSNEESEADDDMVPVEIRPGHIRFQPRGKDLAAPENQLPVDTFQWN 373
Query: 403 GITSKKKGQKWGKERISSWKQDDHENSSQEWRAAQ 437
G TSKKKGQKWGKER SS KQDD+E SSQ+ AAQ
Sbjct: 374 GTTSKKKGQKWGKERTSSHKQDDYEPSSQDGHAAQ 408
>Medtr3g086550.2 | hypothetical protein | LC |
chr3:39228875-39222778 | 20130731
Length = 764
Score = 213 bits (541), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 113/187 (60%), Positives = 128/187 (68%), Gaps = 5/187 (2%)
Query: 398 TFCWNGITSKKKGQKWGKERISSWKQDDHENSSQEWRAAQKAEREHLSNPVDFEKLTPYT 457
T WNG SK QKWGKE+ S+ KQDD E SSQ+ Q A ++ + VDFEKLTPYT
Sbjct: 513 TVQWNGTISK--DQKWGKEKTSAHKQDDCEQSSQDRPTDQNAGKKRTFDAVDFEKLTPYT 570
Query: 458 SLPKEGDVIAYRLIELSSSWTPELSSFRVGKISQYDAKSNRICLEPVSEFPFVLEEKTDQ 517
LPKEG+VIAYRLIELS SWTPELSSFRVGK +QYD+KSNRI L+PVSEFPF +K D
Sbjct: 571 DLPKEGNVIAYRLIELSESWTPELSSFRVGKTTQYDSKSNRIWLQPVSEFPFDFWKKIDD 630
Query: 518 ETSSGQP---DPPLYQEDGSLEVEYTSLADVRMVKHXXXXXXXXXXXXXXLVNPPKATNG 574
G P DP YQEDGSLE++Y SLADVR++KH V P KATN
Sbjct: 631 MDEDGSPSQSDPSPYQEDGSLEIDYASLADVRIIKHGHSDLATVVAHSDAFVTPTKATNN 690
Query: 575 STDEKPA 581
STDEKPA
Sbjct: 691 STDEKPA 697
Score = 187 bits (476), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/166 (59%), Positives = 118/166 (71%), Gaps = 10/166 (6%)
Query: 1 MAAPARLRLLFEDRHMLSKSKTKEGLNRCWFLLKPQHTTISDLTSNLLDAFRLHRTCPGG 60
M+ RLRLLF+DR+MLSKSK KEGL CWFLLKP TTISDL S++L FRLHR CP G
Sbjct: 14 MSNKVRLRLLFDDRNMLSKSKKKEGLKCCWFLLKPHLTTISDLASHILAVFRLHRNCPDG 73
Query: 61 IILSMDGFVLPSFESTCILKDNDIVWVKRKGSVSTDDKPALLPPLSCGRQSIDLPKLLSI 120
I LSMDGFVLPSFESTCILKD DIV VK+KGS+ T KPA+LP + Q I+LPKLL+I
Sbjct: 74 ITLSMDGFVLPSFESTCILKDKDIVCVKKKGSMLTGSKPAMLPSETHENQLIELPKLLAI 133
Query: 121 EGVQEETPEHLRIEQEETRGDETASGEDEDEQIGSGVVCVESKLDG 166
EG QE+ E+ I +++ ++ + VV VESKLDG
Sbjct: 134 EGFQEKREEYETISEDDDDDNDQS----------EDVVNVESKLDG 169
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/215 (50%), Positives = 131/215 (60%), Gaps = 21/215 (9%)
Query: 244 TTDNLALITEVHKDESGRFKGHIHQQSSVAEKD-NKSS------NDQSEPTNDKTRFLQP 296
TT+NLA I E H++E+G K H+++S+A+KD KSS ND+S T+++TR LQP
Sbjct: 194 TTENLADIPEAHEEENGSVKDCTHRKASLAKKDIGKSSTLSCQKNDKSGSTSEETRSLQP 253
Query: 297 QDESETKKVPXXXXXXXXXXXX-------------XXXXXXXXXXXXNTSPVLEKD-EQL 342
QDE E KK+P + S VLEKD +Q+
Sbjct: 254 QDEGEPKKLPSRSARRKKAKRKWLRELKLKEKEKEKEKENENEKDKLHPSQVLEKDDQQI 313
Query: 343 PIKDNNCKVSDVNQQXXXXXXXXDDVIPVEIRPGHIRFQPLRKDQEVPQNQFPVETFCWN 402
PIKDNN KVSDV QQ DD++PVEIRPGHIRFQP KD P+NQ PV+TF WN
Sbjct: 314 PIKDNNGKVSDVRQQSNEESEADDDMVPVEIRPGHIRFQPRGKDLAAPENQLPVDTFQWN 373
Query: 403 GITSKKKGQKWGKERISSWKQDDHENSSQEWRAAQ 437
G TSKKKGQKWGKER SS KQDD+E SSQ+ AAQ
Sbjct: 374 GTTSKKKGQKWGKERTSSHKQDDYEPSSQDGHAAQ 408