Miyakogusa Predicted Gene

Lj0g3v0208169.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0208169.1 Non Characterized Hit- tr|I1IQZ4|I1IQZ4_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,32.39,2e-18,no
description,Methyl-CpG DNA binding; seg,NULL; DNA-binding
domain,DNA-binding, integrase-type; MBD,CUFF.13366.1
         (716 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g074640.1 | methyl-CpG-binding domain protein | HC | chr3:...   298   1e-80
Medtr3g074640.2 | methyl-CpG-binding domain protein | HC | chr3:...   295   8e-80
Medtr2g009040.1 | methyl-CpG-binding domain protein | HC | chr2:...    91   4e-18

>Medtr3g074640.1 | methyl-CpG-binding domain protein | HC |
           chr3:33744413-33737115 | 20130731
          Length = 885

 Score =  298 bits (763), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 241/680 (35%), Positives = 326/680 (47%), Gaps = 140/680 (20%)

Query: 25  QPELHSLSFSSATNGGTNHHFD----IPKIQIDRSIFNESAGSRKQTYXXXXXXXXXXXX 80
           Q EL++++  ++T    N  FD    IPKI  DRS+FNESAGSRKQTY            
Sbjct: 33  QLELNNIADKNST--ARNRRFDDDSVIPKI--DRSVFNESAGSRKQTYSRLRLRKPNSSA 88

Query: 81  XXXXXXXXXXXXFRIPPEPENSDVVSFLKGLFGVVPLRGANNVNPHDXXXXXXXXXXXXX 140
                        RI  + ENS ++  L+GLFGV  LRG N+                  
Sbjct: 89  PVPAPVVPVSSSSRIADDEENSRIIDLLQGLFGVEALRGGND-------------DRAVP 135

Query: 141 GTLHNVPIDVVGGSGLNVPVAVVDGSSSQTKSRKRGRPRKNQEAVVSVP-----VGNGXX 195
             +   P+ V  GS        +DG  S  + RKRGRP ++   V  VP     +     
Sbjct: 136 LQIEFRPLSVQNGS--------IDGVESSQRKRKRGRPSRD---VTPVPGRLLAICEAME 184

Query: 196 XXXXXXXXXXXXXXXXXXKNGLVVGDVGDPFVEQLIERTQGLVTESQMREFMESLEGVWA 255
                             KN  V+ D GDPF+E+LI+R+QG+ TE++++ F+ESL GVWA
Sbjct: 185 TDTEKKVEADMEVVTAEEKNESVLDDAGDPFMEELIKRSQGMNTEAELKVFLESLGGVWA 244

Query: 256 SDRKKRRIVDARILCDLLPPGWKLVLILQRRAGRFSVLCRFYKSPDGHQFESYKEVCTHL 315
           SDRKKRRIVDA  +CDLLP GWKLVLI+QRR    SV+CR Y SPDG QF+SYK+V ++L
Sbjct: 245 SDRKKRRIVDANAVCDLLPTGWKLVLIVQRRGKHNSVVCRRYTSPDGRQFDSYKDVSSYL 304

Query: 316 SSNNG--------------------NFAMASENHQHVGHVPT-SMETDANAISAYHEKQT 354
            S +G                    N  +AS N Q+V HVPT  ++ D NA S++H    
Sbjct: 305 VSLSGVQDIGQLQSCYTDGSQQLSSNINVASAN-QNVAHVPTGGIKIDGNA-SSHH---- 358

Query: 355 SIASSIGTEKQASIASSIGTEKLNIYDGNSNSHLAL----GHKLGDAGRDSDQTED-KQP 409
                   EKQ +I+SS+GT  LNI DGN N  LA+     H   +A R  + + D   P
Sbjct: 359 --------EKQETISSSMGTGNLNISDGNLNGDLAMYCEQSHITSEAFRVPEHSTDVGLP 410

Query: 410 LKADKNDANSVQGCSLKQDNEPHEN--------------------------SVG------ 437
           LK  KN ANSV GC L +D   + N                          S+G      
Sbjct: 411 LKDTKNGANSVPGCFLSEDRVYNLNVGQIPSGGTKIDAHSSHQVKQATMSPSIGTRKLNA 470

Query: 438 -----------------AIQASDAAVNLYIPLVFTSPLSNNDIGIDQLSDERNAVTRTNS 480
                            A++ASD A N  I L FT+P+SN+  GID+ SDERNAVT    
Sbjct: 471 SNRNISSNLNFDRKLVLALKASDTARNPGILLDFTAPISNSGRGIDRCSDERNAVTCIKG 530

Query: 481 GIYNFDGQDRNTVSYETVPCGKDQAHF-DNC---STVMTQTSMLKDSAVGSLFDNYFPSG 536
            + NFD QD++T   ETVP G +Q H  DN    S+ + +  + K   +GS      P+ 
Sbjct: 531 SVSNFDSQDKSTGYCETVPYGNEQVHVGDNGLGPSSTLVENHIQK---IGSESSMLVPNS 587

Query: 537 GVPDASGSGGVDF-IPGLKVGKDVNDNHVYP--NEEVVTSYLQKRSSSDDQMFTMDNLLG 593
                +GS   D  +    VG + ND  +    N+++++S    R+ S  +  + +  L 
Sbjct: 588 EEKMFAGSNLEDIHLLSSVVGMEQNDGKLVENDNQQIISS----RNQSGIEDISTNGELQ 643

Query: 594 GSFEGNLFPLANNHHPSAFQ 613
            S EG L P  N HH ++  
Sbjct: 644 FSSEGTLAPSQNEHHHTSIH 663



 Score =  191 bits (486), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/264 (47%), Positives = 151/264 (57%), Gaps = 28/264 (10%)

Query: 476 TRTNSGIYNFDGQDRNTVSYE--TVPCGKDQAHFDNCSTVMTQTSMLKDSAVGSLFDN-- 531
           +R  SGI +         S E    P   +  H    S  + QTS+LKDSA G  F N  
Sbjct: 627 SRNQSGIEDISTNGELQFSSEGTLAPSQNEHHHTSIHSMDVAQTSVLKDSAEGHFFYNDL 686

Query: 532 ---------YFPSGGV---------PDASGSGGVDFIPGLKVGKDVNDNHVYPNEEVVTS 573
                    + P+G +          DAS  G VDF   L      N NHV P +EV  S
Sbjct: 687 SSSSIDERTWDPNGYINNISFGAWPQDASVFGVVDFTTDLYAAN--NFNHVPPTDEVARS 744

Query: 574 YLQKRSSSDDQMFTMDNLLGGSFEGNLFPLANNHHPSAFQDNMN-ITAGTFDVLKSVDAG 632
            +QK SS + Q+FT DNLL  + E NLF +A N HP+AF DNMN I+AGTF  LK VDAG
Sbjct: 745 CVQKSSSMNGQIFTADNLLHRNSESNLFTVAGNQHPAAFHDNMNNISAGTFSALKYVDAG 804

Query: 633 CVEPQLGIISSSNVVAADACTSARVMQGTSEGRVSVPLGGSMSNCFDKQCDDDVNKEKKS 692
           C++PQLGI+S SNV+A DA  S  VMQG SE   SVP GGS+ N F KQ DD V+K  KS
Sbjct: 805 CMKPQLGIVSCSNVIAPDAYASPTVMQGISE---SVPPGGSILNQFGKQNDDGVSKGNKS 861

Query: 693 CLSEKAKSEVEMFQNDSMGMSKFQ 716
           CLSE A+SE E+FQ DSMG  KF+
Sbjct: 862 CLSEVAQSEAELFQTDSMGFPKFR 885


>Medtr3g074640.2 | methyl-CpG-binding domain protein | HC |
           chr3:33744397-33737034 | 20130731
          Length = 884

 Score =  295 bits (756), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 240/680 (35%), Positives = 325/680 (47%), Gaps = 141/680 (20%)

Query: 25  QPELHSLSFSSATNGGTNHHFD----IPKIQIDRSIFNESAGSRKQTYXXXXXXXXXXXX 80
           Q EL++++  ++T    N  FD    IPKI  DRS+FNESAGSRKQTY            
Sbjct: 33  QLELNNIADKNST--ARNRRFDDDSVIPKI--DRSVFNESAGSRKQTYSRLRLRKPNSSA 88

Query: 81  XXXXXXXXXXXXFRIPPEPENSDVVSFLKGLFGVVPLRGANNVNPHDXXXXXXXXXXXXX 140
                        RI  + ENS ++  L+GLFGV  LRG N+                  
Sbjct: 89  PVPAPVVPVSSSSRIADDEENSRIIDLLQGLFGVEALRGGND-------------DRAVP 135

Query: 141 GTLHNVPIDVVGGSGLNVPVAVVDGSSSQTKSRKRGRPRKNQEAVVSVP-----VGNGXX 195
             +   P+ V  GS        +DG  S  + RKRGRP ++   V  VP     +     
Sbjct: 136 LQIEFRPLSVQNGS--------IDGVESSQRKRKRGRPSRD---VTPVPGRLLAICEAME 184

Query: 196 XXXXXXXXXXXXXXXXXXKNGLVVGDVGDPFVEQLIERTQGLVTESQMREFMESLEGVWA 255
                             KN  V+ D GDPF+E+LI+R+QG+ TE++++ F+ESL GVWA
Sbjct: 185 TDTEKKVEADMEVVTAEEKNESVLDDAGDPFMEELIKRSQGMNTEAELKVFLESLGGVWA 244

Query: 256 SDRKKRRIVDARILCDLLPPGWKLVLILQRRAGRFSVLCRFYKSPDGHQFESYKEVCTHL 315
           SDRKKRRIVDA  +CDLLP GWKLVLI+QRR    SV+CR Y SPDG QF+SYK+V ++L
Sbjct: 245 SDRKKRRIVDANAVCDLLPTGWKLVLIVQRRGKHNSVVCRRYTSPDGRQFDSYKDVSSYL 304

Query: 316 SSNNG--------------------NFAMASENHQHVGHVPT-SMETDANAISAYHEKQT 354
            S +G                    N  +AS N  +V HVPT  ++ D NA S++H    
Sbjct: 305 VSLSGVQDIGQLQSCYTDGSQQLSSNINVASAN--NVAHVPTGGIKIDGNA-SSHH---- 357

Query: 355 SIASSIGTEKQASIASSIGTEKLNIYDGNSNSHLAL----GHKLGDAGRDSDQTED-KQP 409
                   EKQ +I+SS+GT  LNI DGN N  LA+     H   +A R  + + D   P
Sbjct: 358 --------EKQETISSSMGTGNLNISDGNLNGDLAMYCEQSHITSEAFRVPEHSTDVGLP 409

Query: 410 LKADKNDANSVQGCSLKQDNEPHEN--------------------------SVG------ 437
           LK  KN ANSV GC L +D   + N                          S+G      
Sbjct: 410 LKDTKNGANSVPGCFLSEDRVYNLNVGQIPSGGTKIDAHSSHQVKQATMSPSIGTRKLNA 469

Query: 438 -----------------AIQASDAAVNLYIPLVFTSPLSNNDIGIDQLSDERNAVTRTNS 480
                            A++ASD A N  I L FT+P+SN+  GID+ SDERNAVT    
Sbjct: 470 SNRNISSNLNFDRKLVLALKASDTARNPGILLDFTAPISNSGRGIDRCSDERNAVTCIKG 529

Query: 481 GIYNFDGQDRNTVSYETVPCGKDQAHF-DNC---STVMTQTSMLKDSAVGSLFDNYFPSG 536
            + NFD QD++T   ETVP G +Q H  DN    S+ + +  + K   +GS      P+ 
Sbjct: 530 SVSNFDSQDKSTGYCETVPYGNEQVHVGDNGLGPSSTLVENHIQK---IGSESSMLVPNS 586

Query: 537 GVPDASGSGGVDF-IPGLKVGKDVNDNHVYP--NEEVVTSYLQKRSSSDDQMFTMDNLLG 593
                +GS   D  +    VG + ND  +    N+++++S    R+ S  +  + +  L 
Sbjct: 587 EEKMFAGSNLEDIHLLSSVVGMEQNDGKLVENDNQQIISS----RNQSGIEDISTNGELQ 642

Query: 594 GSFEGNLFPLANNHHPSAFQ 613
            S EG L P  N HH ++  
Sbjct: 643 FSSEGTLAPSQNEHHHTSIH 662



 Score =  191 bits (486), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/264 (47%), Positives = 151/264 (57%), Gaps = 28/264 (10%)

Query: 476 TRTNSGIYNFDGQDRNTVSYE--TVPCGKDQAHFDNCSTVMTQTSMLKDSAVGSLFDN-- 531
           +R  SGI +         S E    P   +  H    S  + QTS+LKDSA G  F N  
Sbjct: 626 SRNQSGIEDISTNGELQFSSEGTLAPSQNEHHHTSIHSMDVAQTSVLKDSAEGHFFYNDL 685

Query: 532 ---------YFPSGGV---------PDASGSGGVDFIPGLKVGKDVNDNHVYPNEEVVTS 573
                    + P+G +          DAS  G VDF   L      N NHV P +EV  S
Sbjct: 686 SSSSIDERTWDPNGYINNISFGAWPQDASVFGVVDFTTDLYAAN--NFNHVPPTDEVARS 743

Query: 574 YLQKRSSSDDQMFTMDNLLGGSFEGNLFPLANNHHPSAFQDNMN-ITAGTFDVLKSVDAG 632
            +QK SS + Q+FT DNLL  + E NLF +A N HP+AF DNMN I+AGTF  LK VDAG
Sbjct: 744 CVQKSSSMNGQIFTADNLLHRNSESNLFTVAGNQHPAAFHDNMNNISAGTFSALKYVDAG 803

Query: 633 CVEPQLGIISSSNVVAADACTSARVMQGTSEGRVSVPLGGSMSNCFDKQCDDDVNKEKKS 692
           C++PQLGI+S SNV+A DA  S  VMQG SE   SVP GGS+ N F KQ DD V+K  KS
Sbjct: 804 CMKPQLGIVSCSNVIAPDAYASPTVMQGISE---SVPPGGSILNQFGKQNDDGVSKGNKS 860

Query: 693 CLSEKAKSEVEMFQNDSMGMSKFQ 716
           CLSE A+SE E+FQ DSMG  KF+
Sbjct: 861 CLSEVAQSEAELFQTDSMGFPKFR 884


>Medtr2g009040.1 | methyl-CpG-binding domain protein | HC |
           chr2:1743193-1738190 | 20130731
          Length = 806

 Score = 90.9 bits (224), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/113 (46%), Positives = 71/113 (62%), Gaps = 5/113 (4%)

Query: 214 KNGLVV-----GDVGDPFVEQLIERTQGLVTESQMREFMESLEGVWASDRKKRRIVDARI 268
           KNG+V+      +V  PF  ++  RT+GL  E ++  F+  L G W S R+KRRIVDA  
Sbjct: 157 KNGVVIDFAALSEVEHPFAAEIARRTEGLKEEEELLGFLSDLVGQWGSRRRKRRIVDASD 216

Query: 269 LCDLLPPGWKLVLILQRRAGRFSVLCRFYKSPDGHQFESYKEVCTHLSSNNGN 321
             D+LP GWKL+L L+R+ GR  + CR Y SP+G QF S KEV ++L S  G+
Sbjct: 217 FGDVLPLGWKLLLSLKRKDGRAWIYCRRYISPNGQQFLSCKEVSSYLQSLFGH 269