Miyakogusa Predicted Gene
- Lj0g3v0208159.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0208159.1 Non Characterized Hit- tr|E1IGV4|E1IGV4_9CHLR
Putative uncharacterized protein OS=Oscillochloris tri,26.56,3.7,
,CUFF.13367.1
(378 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g074640.1 | methyl-CpG-binding domain protein | HC | chr3:... 192 4e-49
Medtr3g074640.2 | methyl-CpG-binding domain protein | HC | chr3:... 192 4e-49
>Medtr3g074640.1 | methyl-CpG-binding domain protein | HC |
chr3:33744413-33737115 | 20130731
Length = 885
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 125/264 (47%), Positives = 154/264 (58%), Gaps = 28/264 (10%)
Query: 138 TRTNSGIYNF--DGQDRNTVSYETVPCGKDQAHFDNCSTVMTQTSMLKDSAVGSLFDN-- 193
+R SGI + +G+ + + P + H S + QTS+LKDSA G F N
Sbjct: 627 SRNQSGIEDISTNGELQFSSEGTLAPSQNEHHHTSIHSMDVAQTSVLKDSAEGHFFYNDL 686
Query: 194 ---------YFPSGGV---------PDASGSGGVDFIPGLKVGKDVNDNHVYPNEEVVTS 235
+ P+G + DAS G VDF L N NHV P +EV S
Sbjct: 687 SSSSIDERTWDPNGYINNISFGAWPQDASVFGVVDFTTDLYAAN--NFNHVPPTDEVARS 744
Query: 236 YLQKRSSSDDQMFTMDNLLGGSFEGNLFPLANNHHPSAFQDNMN-ITAGTFDVLKSVDAG 294
+QK SS + Q+FT DNLL + E NLF +A N HP+AF DNMN I+AGTF LK VDAG
Sbjct: 745 CVQKSSSMNGQIFTADNLLHRNSESNLFTVAGNQHPAAFHDNMNNISAGTFSALKYVDAG 804
Query: 295 CVEPQLGIISSSNVVAADACTSARVMQGTSEGRVSVPLGGSMSNCFDKQCDDDVNKEKKS 354
C++PQLGI+S SNV+A DA S VMQG SE SVP GGS+ N F KQ DD V+K KS
Sbjct: 805 CMKPQLGIVSCSNVIAPDAYASPTVMQGISE---SVPPGGSILNQFGKQNDDGVSKGNKS 861
Query: 355 CLSEKAKSEVEMFQNDSMGMSKFQ 378
CLSE A+SE E+FQ DSMG KF+
Sbjct: 862 CLSEVAQSEAELFQTDSMGFPKFR 885
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 142/312 (45%), Gaps = 68/312 (21%)
Query: 25 EKQASIASSIGTEKLNIYDGNSNSHLAL----GHKLGDAGRDSDQTED-KQPLKADKNDA 79
EKQ +I+SS+GT LNI DGN N LA+ H +A R + + D PLK KN A
Sbjct: 359 EKQETISSSMGTGNLNISDGNLNGDLAMYCEQSHITSEAFRVPEHSTDVGLPLKDTKNGA 418
Query: 80 NSVQGCSLKQDNEPHEN--------------------------SVG-------------- 99
NSV GC L +D + N S+G
Sbjct: 419 NSVPGCFLSEDRVYNLNVGQIPSGGTKIDAHSSHQVKQATMSPSIGTRKLNASNRNISSN 478
Query: 100 ---------AIQASDAAVNLYIPLVFTSPLSNNDIGIDQLSDERNAVTRTNSGIYNFDGQ 150
A++ASD A N I L FT+P+SN+ GID+ SDERNAVT + NFD Q
Sbjct: 479 LNFDRKLVLALKASDTARNPGILLDFTAPISNSGRGIDRCSDERNAVTCIKGSVSNFDSQ 538
Query: 151 DRNTVSYETVPCGKDQAHF-DN---CSTVMTQTSMLKDSAVGSLFDNYFPSGGVPDASGS 206
D++T ETVP G +Q H DN S+ + + + K +GS P+ +GS
Sbjct: 539 DKSTGYCETVPYGNEQVHVGDNGLGPSSTLVENHIQK---IGSESSMLVPNSEEKMFAGS 595
Query: 207 GGVDF-IPGLKVGKDVNDNHVYP--NEEVVTSYLQKRSSSDDQMFTMDNLLGGSFEGNLF 263
D + VG + ND + N+++++S R+ S + + + L S EG L
Sbjct: 596 NLEDIHLLSSVVGMEQNDGKLVENDNQQIISS----RNQSGIEDISTNGELQFSSEGTLA 651
Query: 264 PLANNHHPSAFQ 275
P N HH ++
Sbjct: 652 PSQNEHHHTSIH 663
>Medtr3g074640.2 | methyl-CpG-binding domain protein | HC |
chr3:33744397-33737034 | 20130731
Length = 884
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 125/264 (47%), Positives = 154/264 (58%), Gaps = 28/264 (10%)
Query: 138 TRTNSGIYNF--DGQDRNTVSYETVPCGKDQAHFDNCSTVMTQTSMLKDSAVGSLFDN-- 193
+R SGI + +G+ + + P + H S + QTS+LKDSA G F N
Sbjct: 626 SRNQSGIEDISTNGELQFSSEGTLAPSQNEHHHTSIHSMDVAQTSVLKDSAEGHFFYNDL 685
Query: 194 ---------YFPSGGV---------PDASGSGGVDFIPGLKVGKDVNDNHVYPNEEVVTS 235
+ P+G + DAS G VDF L N NHV P +EV S
Sbjct: 686 SSSSIDERTWDPNGYINNISFGAWPQDASVFGVVDFTTDLYAAN--NFNHVPPTDEVARS 743
Query: 236 YLQKRSSSDDQMFTMDNLLGGSFEGNLFPLANNHHPSAFQDNMN-ITAGTFDVLKSVDAG 294
+QK SS + Q+FT DNLL + E NLF +A N HP+AF DNMN I+AGTF LK VDAG
Sbjct: 744 CVQKSSSMNGQIFTADNLLHRNSESNLFTVAGNQHPAAFHDNMNNISAGTFSALKYVDAG 803
Query: 295 CVEPQLGIISSSNVVAADACTSARVMQGTSEGRVSVPLGGSMSNCFDKQCDDDVNKEKKS 354
C++PQLGI+S SNV+A DA S VMQG SE SVP GGS+ N F KQ DD V+K KS
Sbjct: 804 CMKPQLGIVSCSNVIAPDAYASPTVMQGISE---SVPPGGSILNQFGKQNDDGVSKGNKS 860
Query: 355 CLSEKAKSEVEMFQNDSMGMSKFQ 378
CLSE A+SE E+FQ DSMG KF+
Sbjct: 861 CLSEVAQSEAELFQTDSMGFPKFR 884
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 142/312 (45%), Gaps = 68/312 (21%)
Query: 25 EKQASIASSIGTEKLNIYDGNSNSHLAL----GHKLGDAGRDSDQTED-KQPLKADKNDA 79
EKQ +I+SS+GT LNI DGN N LA+ H +A R + + D PLK KN A
Sbjct: 358 EKQETISSSMGTGNLNISDGNLNGDLAMYCEQSHITSEAFRVPEHSTDVGLPLKDTKNGA 417
Query: 80 NSVQGCSLKQDNEPHEN--------------------------SVG-------------- 99
NSV GC L +D + N S+G
Sbjct: 418 NSVPGCFLSEDRVYNLNVGQIPSGGTKIDAHSSHQVKQATMSPSIGTRKLNASNRNISSN 477
Query: 100 ---------AIQASDAAVNLYIPLVFTSPLSNNDIGIDQLSDERNAVTRTNSGIYNFDGQ 150
A++ASD A N I L FT+P+SN+ GID+ SDERNAVT + NFD Q
Sbjct: 478 LNFDRKLVLALKASDTARNPGILLDFTAPISNSGRGIDRCSDERNAVTCIKGSVSNFDSQ 537
Query: 151 DRNTVSYETVPCGKDQAHF-DN---CSTVMTQTSMLKDSAVGSLFDNYFPSGGVPDASGS 206
D++T ETVP G +Q H DN S+ + + + K +GS P+ +GS
Sbjct: 538 DKSTGYCETVPYGNEQVHVGDNGLGPSSTLVENHIQK---IGSESSMLVPNSEEKMFAGS 594
Query: 207 GGVDF-IPGLKVGKDVNDNHVYP--NEEVVTSYLQKRSSSDDQMFTMDNLLGGSFEGNLF 263
D + VG + ND + N+++++S R+ S + + + L S EG L
Sbjct: 595 NLEDIHLLSSVVGMEQNDGKLVENDNQQIISS----RNQSGIEDISTNGELQFSSEGTLA 650
Query: 264 PLANNHHPSAFQ 275
P N HH ++
Sbjct: 651 PSQNEHHHTSIH 662