Miyakogusa Predicted Gene
- Lj0g3v0208019.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0208019.1 Non Characterized Hit- tr|I1JJN0|I1JJN0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.57232
PE,89.12,0,RNA-binding domain, RBD,NULL; CCCH zinc finger,NULL; no
description,Nucleotide-binding, alpha-beta p,CUFF.13341.1
(485 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr3g079200.1 | zinc finger CCCH domain protein | HC | chr3:35... 702 0.0
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 62 1e-09
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 60 4e-09
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 55 1e-07
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 50 5e-06
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 49 8e-06
>Medtr3g079200.1 | zinc finger CCCH domain protein | HC |
chr3:35625559-35621770 | 20130731
Length = 492
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/375 (90%), Positives = 353/375 (94%), Gaps = 2/375 (0%)
Query: 1 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGR 60
MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGR
Sbjct: 1 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGR 60
Query: 61 DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREFFAE 120
DARYKK+EICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSI SNDAIPKSDVNRE+FAE
Sbjct: 61 DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSNDAIPKSDVNREYFAE 120
Query: 121 EHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYR 180
EHDR+ARAG+DYESS+GK RPNDTILKLQRTTPYYKRNRAHICSFY RGECTRGAECPYR
Sbjct: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHICSFYTRGECTRGAECPYR 180
Query: 181 HEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMATLDAPEDESIKTLYVGGLDARVT 240
HEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEM++L+ PEDESIKTLYVGGLDARVT
Sbjct: 181 HEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMSSLEVPEDESIKTLYVGGLDARVT 240
Query: 241 EQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXXXXXXXXXXXNKLVIKGLRLKLMWGR 300
EQDLRDNFYAHGEIES+KMVLQRACAFVTYTTR NKLVIKGLRLKLMWGR
Sbjct: 241 EQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR 300
Query: 301 PQSAKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMVYYNNPPP--QGRSYYP 358
PQSAKPESDG DQARQQASVAHSGL PRAVISQQQNQDQTQGM+YYNNPPP Q R+YYP
Sbjct: 301 PQSAKPESDGLDQARQQASVAHSGLFPRAVISQQQNQDQTQGMLYYNNPPPPQQERNYYP 360
Query: 359 SMDPQRMGAVTANQD 373
SMDPQRMGA+ +QD
Sbjct: 361 SMDPQRMGALLPSQD 375
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 20/139 (14%)
Query: 224 DESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXXXXXXXXXX 283
D + T+YVG LD V+E++L+ NF GEI S+K+ +AC FV + R
Sbjct: 230 DVNNTTIYVGNLDLNVSEEELKQNFLQFGEIVSVKVHPGKACGFVQFGARASAEEAIQKM 289
Query: 284 XNKLVIKGLRLKLMWGRPQSAKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGM 343
K++ + + +++ WGRPQ+A+ + G QQ +Q Q
Sbjct: 290 QGKILGQQV-IRVSWGRPQTARQDVPGG-------------------WGQQVDQSQWSAY 329
Query: 344 VYYNNPPPQGRSYYPSMDP 362
Y P + +Y + DP
Sbjct: 330 YGYGQPGYEAYAYGAAQDP 348
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 224 DESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXXXXXXXXXX 283
D + T++VGGLD+ VT++DL+ F +GEI S+K+ + + C FV + R
Sbjct: 291 DSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPVGKGCGFVQFANR-NNAEEALQK 349
Query: 284 XNKLVIKGLRLKLMWGR 300
N +I ++L WGR
Sbjct: 350 LNGTMIGKQTVRLSWGR 366
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 224 DESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXXXXXXXXXX 283
D + T++VGGLD T +DLR F +GEI S+K+ + + C FV + R
Sbjct: 288 DSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR-NNAEEALQK 346
Query: 284 XNKLVIKGLRLKLMWGR 300
N + ++L WGR
Sbjct: 347 LNGTTVGKQTVRLSWGR 363
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 8/109 (7%)
Query: 204 PVAMKLLGKAGEMATLDAPE-------DESIKTLYVGGLDARVTEQDLRDNFYAHGEIES 256
P + K LG A+ P+ D + T++VG LD VT++ L+ F +GE+
Sbjct: 243 PASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVH 302
Query: 257 IKMVLQRACAFVTYTTRXXXXXXXXXXXNKLVIKGLRLKLMWGRPQSAK 305
+K+ + C FV + R N ++ G ++L WGR + K
Sbjct: 303 VKIPSGKRCGFVQFADR-SSAEEALRVLNGTLLGGQNVRLSWGRSPANK 350
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 224 DESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXXXXXXXXXX 283
D + T++VG LD VT+ LR F +GE+ +K+ + C FV ++ R
Sbjct: 257 DPNNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKIPSGKRCGFVQFSDR-SCAEEAIRV 315
Query: 284 XNKLVIKGLRLKLMWGRPQSAK 305
N ++ G ++L WGR S K
Sbjct: 316 LNGTLLGGQNVRLSWGRTPSNK 337