Miyakogusa Predicted Gene

Lj0g3v0208019.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0208019.1 Non Characterized Hit- tr|I1JJN0|I1JJN0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.57232
PE,89.12,0,RNA-binding domain, RBD,NULL; CCCH zinc finger,NULL; no
description,Nucleotide-binding, alpha-beta p,CUFF.13341.1
         (485 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g079200.1 | zinc finger CCCH domain protein | HC | chr3:35...   702   0.0  
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch...    62   1e-09
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch...    60   4e-09
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch...    55   1e-07
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch...    50   5e-06
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch...    49   8e-06

>Medtr3g079200.1 | zinc finger CCCH domain protein | HC |
           chr3:35625559-35621770 | 20130731
          Length = 492

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/375 (90%), Positives = 353/375 (94%), Gaps = 2/375 (0%)

Query: 1   MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGR 60
           MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGR
Sbjct: 1   MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGR 60

Query: 61  DARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREFFAE 120
           DARYKK+EICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSI SNDAIPKSDVNRE+FAE
Sbjct: 61  DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSNDAIPKSDVNREYFAE 120

Query: 121 EHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYR 180
           EHDR+ARAG+DYESS+GK RPNDTILKLQRTTPYYKRNRAHICSFY RGECTRGAECPYR
Sbjct: 121 EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHICSFYTRGECTRGAECPYR 180

Query: 181 HEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMATLDAPEDESIKTLYVGGLDARVT 240
           HEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEM++L+ PEDESIKTLYVGGLDARVT
Sbjct: 181 HEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMSSLEVPEDESIKTLYVGGLDARVT 240

Query: 241 EQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXXXXXXXXXXXNKLVIKGLRLKLMWGR 300
           EQDLRDNFYAHGEIES+KMVLQRACAFVTYTTR           NKLVIKGLRLKLMWGR
Sbjct: 241 EQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR 300

Query: 301 PQSAKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMVYYNNPPP--QGRSYYP 358
           PQSAKPESDG DQARQQASVAHSGL PRAVISQQQNQDQTQGM+YYNNPPP  Q R+YYP
Sbjct: 301 PQSAKPESDGLDQARQQASVAHSGLFPRAVISQQQNQDQTQGMLYYNNPPPPQQERNYYP 360

Query: 359 SMDPQRMGAVTANQD 373
           SMDPQRMGA+  +QD
Sbjct: 361 SMDPQRMGALLPSQD 375


>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
           chr2:41853094-41847353 | 20130731
          Length = 428

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 63/139 (45%), Gaps = 20/139 (14%)

Query: 224 DESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXXXXXXXXXX 283
           D +  T+YVG LD  V+E++L+ NF   GEI S+K+   +AC FV +  R          
Sbjct: 230 DVNNTTIYVGNLDLNVSEEELKQNFLQFGEIVSVKVHPGKACGFVQFGARASAEEAIQKM 289

Query: 284 XNKLVIKGLRLKLMWGRPQSAKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGM 343
             K++ + + +++ WGRPQ+A+ +  G                      QQ +Q Q    
Sbjct: 290 QGKILGQQV-IRVSWGRPQTARQDVPGG-------------------WGQQVDQSQWSAY 329

Query: 344 VYYNNPPPQGRSYYPSMDP 362
             Y  P  +  +Y  + DP
Sbjct: 330 YGYGQPGYEAYAYGAAQDP 348


>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
           chr1:6171590-6176327 | 20130731
          Length = 425

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 224 DESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXXXXXXXXXX 283
           D +  T++VGGLD+ VT++DL+  F  +GEI S+K+ + + C FV +  R          
Sbjct: 291 DSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPVGKGCGFVQFANR-NNAEEALQK 349

Query: 284 XNKLVIKGLRLKLMWGR 300
            N  +I    ++L WGR
Sbjct: 350 LNGTMIGKQTVRLSWGR 366


>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
           chr3:46662442-46658399 | 20130731
          Length = 420

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)

Query: 224 DESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXXXXXXXXXX 283
           D +  T++VGGLD   T +DLR  F  +GEI S+K+ + + C FV +  R          
Sbjct: 288 DSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANR-NNAEEALQK 346

Query: 284 XNKLVIKGLRLKLMWGR 300
            N   +    ++L WGR
Sbjct: 347 LNGTTVGKQTVRLSWGR 363


>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
           chr4:55111286-55115662 | 20130731
          Length = 411

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 204 PVAMKLLGKAGEMATLDAPE-------DESIKTLYVGGLDARVTEQDLRDNFYAHGEIES 256
           P + K LG     A+   P+       D +  T++VG LD  VT++ L+  F  +GE+  
Sbjct: 243 PASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVH 302

Query: 257 IKMVLQRACAFVTYTTRXXXXXXXXXXXNKLVIKGLRLKLMWGRPQSAK 305
           +K+   + C FV +  R           N  ++ G  ++L WGR  + K
Sbjct: 303 VKIPSGKRCGFVQFADR-SSAEEALRVLNGTLLGGQNVRLSWGRSPANK 350


>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
           chr2:7987418-7992129 | 20130731
          Length = 401

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 224 DESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTRXXXXXXXXXX 283
           D +  T++VG LD  VT+  LR  F  +GE+  +K+   + C FV ++ R          
Sbjct: 257 DPNNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKIPSGKRCGFVQFSDR-SCAEEAIRV 315

Query: 284 XNKLVIKGLRLKLMWGRPQSAK 305
            N  ++ G  ++L WGR  S K
Sbjct: 316 LNGTLLGGQNVRLSWGRTPSNK 337