Miyakogusa Predicted Gene

Lj0g3v0207679.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0207679.1 tr|I0Z1L2|I0Z1L2_9CHLO DNA glycosylase
OS=Coccomyxa subellipsoidea C-169 PE=4
SV=1,48.45,3e-19,DNA-glycosylase,DNA glycosylase; HhH-GPD,HhH-GPD
domain; no description,DNA glycosylase; 5-METHYLCYT,CUFF.13312.1
         (109 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0037s0250.2 | base excision DNA repair protein, HhH-GPD fam...   145   1e-35
Medtr0037s0060.3 | base excision DNA repair protein, HhH-GPD fam...   143   5e-35
Medtr0037s0060.1 | base excision DNA repair protein, HhH-GPD fam...   143   5e-35
Medtr0037s0060.2 | base excision DNA repair protein, HhH-GPD fam...   143   5e-35
Medtr0037s0250.1 | base excision DNA repair protein, HhH-GPD fam...    94   4e-20
Medtr6g034730.1 | HhH-GPD base excision DNA repair family protei...    89   9e-19

>Medtr0037s0250.2 | base excision DNA repair protein, HhH-GPD family
           protein | HC | scaffold0037:102615-107252 | 20130731
          Length = 280

 Score =  145 bits (365), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/98 (67%), Positives = 78/98 (79%), Gaps = 1/98 (1%)

Query: 7   QVRAVISDFFRLCPDAQTCTQVSKDEIVEVIRKLGLH-KRAAMLQRFSREYLEENWTHVT 65
           Q + V+ +FF LCPDA+TC QV ++EI EVI+ LG   KR+  LQRFSREYL E WT+VT
Sbjct: 178 QTKQVLDNFFELCPDAETCMQVKREEIEEVIKTLGFQVKRSRSLQRFSREYLTETWTYVT 237

Query: 66  QLHGVGKYAADAYAIFCTGKWDRVTPSDHKLVKYWEFL 103
           +LHGVGKYAADAYAIFCTGKWD V P D+KL +YW FL
Sbjct: 238 ELHGVGKYAADAYAIFCTGKWDEVVPDDYKLNEYWNFL 275


>Medtr0037s0060.3 | base excision DNA repair protein, HhH-GPD family
           protein | LC | scaffold0037:33142-29197 | 20130731
          Length = 282

 Score =  143 bits (360), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 77/101 (76%), Gaps = 1/101 (0%)

Query: 7   QVRAVISDFFRLCPDAQTCTQVSKDEIVEVIRKLGLH-KRAAMLQRFSREYLEENWTHVT 65
           Q   V+++FF+LCP+A+TC QV K EI EVI+ LGL  KR+  LQR SREYL   WT+VT
Sbjct: 178 QAEKVLANFFKLCPNAETCMQVPKVEIQEVIKTLGLQVKRSESLQRLSREYLAGTWTYVT 237

Query: 66  QLHGVGKYAADAYAIFCTGKWDRVTPSDHKLVKYWEFLRLI 106
           +LH VGKYAADAYAIFCTGKWD V P DHKL KYW FL  I
Sbjct: 238 ELHSVGKYAADAYAIFCTGKWDEVVPDDHKLNKYWNFLHSI 278


>Medtr0037s0060.1 | base excision DNA repair protein, HhH-GPD family
           protein | LC | scaffold0037:32923-29197 | 20130731
          Length = 282

 Score =  143 bits (360), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 77/101 (76%), Gaps = 1/101 (0%)

Query: 7   QVRAVISDFFRLCPDAQTCTQVSKDEIVEVIRKLGLH-KRAAMLQRFSREYLEENWTHVT 65
           Q   V+++FF+LCP+A+TC QV K EI EVI+ LGL  KR+  LQR SREYL   WT+VT
Sbjct: 178 QAEKVLANFFKLCPNAETCMQVPKVEIQEVIKTLGLQVKRSESLQRLSREYLAGTWTYVT 237

Query: 66  QLHGVGKYAADAYAIFCTGKWDRVTPSDHKLVKYWEFLRLI 106
           +LH VGKYAADAYAIFCTGKWD V P DHKL KYW FL  I
Sbjct: 238 ELHSVGKYAADAYAIFCTGKWDEVVPDDHKLNKYWNFLHSI 278


>Medtr0037s0060.2 | base excision DNA repair protein, HhH-GPD family
           protein | LC | scaffold0037:32923-29197 | 20130731
          Length = 282

 Score =  143 bits (360), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 67/101 (66%), Positives = 77/101 (76%), Gaps = 1/101 (0%)

Query: 7   QVRAVISDFFRLCPDAQTCTQVSKDEIVEVIRKLGLH-KRAAMLQRFSREYLEENWTHVT 65
           Q   V+++FF+LCP+A+TC QV K EI EVI+ LGL  KR+  LQR SREYL   WT+VT
Sbjct: 178 QAEKVLANFFKLCPNAETCMQVPKVEIQEVIKTLGLQVKRSESLQRLSREYLAGTWTYVT 237

Query: 66  QLHGVGKYAADAYAIFCTGKWDRVTPSDHKLVKYWEFLRLI 106
           +LH VGKYAADAYAIFCTGKWD V P DHKL KYW FL  I
Sbjct: 238 ELHSVGKYAADAYAIFCTGKWDEVVPDDHKLNKYWNFLHSI 278


>Medtr0037s0250.1 | base excision DNA repair protein, HhH-GPD family
           protein | HC | scaffold0037:102540-105043 | 20130731
          Length = 252

 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 53/69 (76%), Gaps = 1/69 (1%)

Query: 7   QVRAVISDFFRLCPDAQTCTQVSKDEIVEVIRKLGLH-KRAAMLQRFSREYLEENWTHVT 65
           Q + V+ +FF LCPDA+TC QV ++EI EVI+ LG   KR+  LQRFSREYL E WT+VT
Sbjct: 181 QTKQVLDNFFELCPDAETCMQVKREEIEEVIKTLGFQVKRSRSLQRFSREYLTETWTYVT 240

Query: 66  QLHGVGKYA 74
           +LHGVGKY 
Sbjct: 241 ELHGVGKYV 249


>Medtr6g034730.1 | HhH-GPD base excision DNA repair family protein
          | LC | chr6:14200273-14200662 | 20130731
          Length = 96

 Score = 89.0 bits (219), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 51/68 (75%), Gaps = 1/68 (1%)

Query: 6  MQVRAVISDFFRLCPDAQTCTQVSKDEIVEVIRKLGLH-KRAAMLQRFSREYLEENWTHV 64
          M V+ V+ +FF+LCPD +TC QV+ +EI EVIR LGL  KR+  LQ  SREYL E WT+V
Sbjct: 1  MLVKQVLDNFFKLCPDVETCMQVTMEEIEEVIRTLGLQVKRSGSLQHLSREYLTETWTYV 60

Query: 65 TQLHGVGK 72
          T+LHGVG 
Sbjct: 61 TELHGVGN 68