Miyakogusa Predicted Gene

Lj0g3v0206979.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0206979.1 CUFF.13380.1
         (136 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g023445.1 | DNA-directed RNA polymerase | LC | chr8:845866...   180   4e-46
Medtr1g022135.1 | DNA-directed RNA polymerase | HC | chr1:686549...   108   2e-24
Medtr1g023500.1 | DNA-directed RNA polymerase subunit beta | HC ...   100   4e-22
Medtr3g105990.1 | DNA-directed RNA polymerase subunit beta | HC ...    74   5e-14
Medtr4g124030.1 | DNA-directed RNA polymerase | HC | chr4:511718...    57   5e-09

>Medtr8g023445.1 | DNA-directed RNA polymerase | LC |
            chr8:8458667-8488921 | 20130731
          Length = 2002

 Score =  180 bits (456), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 84/94 (89%), Positives = 88/94 (93%)

Query: 42   SGLRIGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRSCGLLGYYNYKLKIGVCPSCK 101
             GLR+GEMERDCLIAYGASMLIFERLMLSSDP+EVQVCR+CGLLGYYN+KLK GVC SCK
Sbjct: 1908 GGLRVGEMERDCLIAYGASMLIFERLMLSSDPYEVQVCRACGLLGYYNHKLKAGVCSSCK 1967

Query: 102  NGDQISNMKLPYACKLLIQELQSMNIVPRLKLAD 135
            NG QIS MKLPYACKLLIQELQSMNIVPRLKL D
Sbjct: 1968 NGKQISTMKLPYACKLLIQELQSMNIVPRLKLED 2001


>Medtr1g022135.1 | DNA-directed RNA polymerase | HC |
           chr1:6865496-6872581 | 20130731
          Length = 299

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 58/68 (85%)

Query: 68  MLSSDPFEVQVCRSCGLLGYYNYKLKIGVCPSCKNGDQISNMKLPYACKLLIQELQSMNI 127
           +L+ D  + +VC +CGLLGYYN+KLK G C SCKNG QISN+K+PYACKLLIQELQSMNI
Sbjct: 229 ILNKDAMDDKVCGACGLLGYYNHKLKAGTCSSCKNGKQISNVKVPYACKLLIQELQSMNI 288

Query: 128 VPRLKLAD 135
           VPRLKL D
Sbjct: 289 VPRLKLED 296


>Medtr1g023500.1 | DNA-directed RNA polymerase subunit beta | HC |
            chr1:7523400-7533496 | 20130731
          Length = 1195

 Score =  100 bits (249), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/89 (51%), Positives = 56/89 (62%)

Query: 43   GLRIGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRSCGLLGYYNYKLKIGVCPSCKN 102
            GLR GEMERDC+IA+GA+  + ERL   SD + V VC  CGL+   N K     C  CKN
Sbjct: 1091 GLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKN 1150

Query: 103  GDQISNMKLPYACKLLIQELQSMNIVPRL 131
               I  + +PYACKLL QEL +M I PR+
Sbjct: 1151 KTDIVQVYIPYACKLLFQELMAMAIAPRM 1179


>Medtr3g105990.1 | DNA-directed RNA polymerase subunit beta | HC |
            chr3:48883860-48876376 | 20130731
          Length = 1188

 Score = 73.6 bits (179), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/94 (40%), Positives = 52/94 (55%), Gaps = 7/94 (7%)

Query: 41   FSGLRIGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRSCGLLGYY-------NYKLK 93
            F G++ GEMERDCLIA+GAS  ++ERL   SD  ++ +C  C  +            K++
Sbjct: 1086 FGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIR 1145

Query: 94   IGVCPSCKNGDQISNMKLPYACKLLIQELQSMNI 127
               C  C++ D I    +PY  KLL QEL SM I
Sbjct: 1146 GPYCRFCESADDIVVASVPYGAKLLSQELFSMGI 1179


>Medtr4g124030.1 | DNA-directed RNA polymerase | HC |
            chr4:51171803-51193467 | 20130731
          Length = 1191

 Score = 57.0 bits (136), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 18/111 (16%)

Query: 43   GLRIGEMERDCLIAYGASMLIFERLMLSSDPFEVQVCRSCGLLGYYNY------------ 90
            G+R GEMERD L+A+GA+ L+ +RL   SD     VC  CG +    +            
Sbjct: 1072 GIRFGEMERDSLLAHGAAYLLHDRLHTCSDYHIADVCSICGSMLSTTFIEPQKRPVRDIP 1131

Query: 91   ------KLKIGVCPSCKNGDQISNMKLPYACKLLIQELQSMNIVPRLKLAD 135
                    +   C +C+    +  + +PY  + L  EL +MNI   LKL++
Sbjct: 1132 GIPVRRAPRKVTCHACQTSKGMETVAMPYIFRYLAAELAAMNIKMTLKLSN 1182