Miyakogusa Predicted Gene

Lj0g3v0206689.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0206689.1 tr|G7ZZF8|G7ZZF8_MEDTR Transcription elongation
factor SPT6 OS=Medicago truncatula GN=MTR_086s0014 P,70.76,0,no
description,Tex-like domain; no description,Tex RuvX-like domain; no
description,Nucleic acid-bin,CUFF.13269.1
         (1666 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g088700.1 | global transcription factor | HC | chr7:345915...  1209   0.0  
Medtr7g087475.1 | global transcription factor | HC | chr7:340477...   628   e-179
Medtr7g087460.1 | global transcription factor | HC | chr7:340389...   456   e-128

>Medtr7g088700.1 | global transcription factor | HC |
            chr7:34591539-34580098 | 20130731
          Length = 1638

 Score = 1209 bits (3127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 636/1190 (53%), Positives = 820/1190 (68%), Gaps = 57/1190 (4%)

Query: 203  MTIDGEGVDNSDIPERMQXXXXXXXXXXXXGMSIEEESSWMLHQLASNINPL------SS 256
            MT   + +   DIPERMQ            G SI EE+ W++ QL     P       SS
Sbjct: 273  MTEKDDMIRELDIPERMQISEESTGAPD--GSSINEETQWIVKQLKHGAVPWIRKKDSSS 330

Query: 257  EAKSCGLVDTVKREDIDRFLELYHTNKYDIPFIAMYRKEQCLSLLEDPNRDESDNAVVND 316
            + K   L   + + DI RFLEL+H    DIPFIAMYRKE+CLSLL+D  R E+ +   + 
Sbjct: 331  QNKEQEL--PINQGDIVRFLELHHGQSLDIPFIAMYRKEECLSLLKDLERPEAGDENWDK 388

Query: 317  IERXXXXXXXXXXXXXXXXDKKWLLLQKRKSMLRRYYNKHFEEGCEMSFAVEESSFRKQI 376
              +                D+KWLLLQKRKS L+ YYNK FEE     +     +  +Q+
Sbjct: 389  NNKTPILKWHKILWALHDLDRKWLLLQKRKSALQLYYNKRFEEESRRVYDETRLNLNRQL 448

Query: 377  CDSITSMLEKAETEREIDDIDMKFNLYFPPAHEFSD-SSYKRPLLKTYFSNCCKAGLWSL 435
             +S+   L++AE+ERE+DD+D KFN++FPP     D   YKRP  K+ +S   KAGLW +
Sbjct: 449  FESVMRSLKEAESEREVDDVDSKFNVHFPPGEAGVDEGQYKRPKRKSMYSTFSKAGLWEV 508

Query: 436  ASKFG-DPEKFGSLLTLKKLGMDVEEDPAESPEEIASIYNCETFQTSEAVLKGARHMAVV 494
            AS+FG   E+ G  L+L +L     EDP E+PEE+AS + C  + T E VLK ARHMA V
Sbjct: 509  ASRFGCSSEQLGLCLSLVQL--QELEDPKETPEEVASNFTCAMYDTPEEVLKCARHMAAV 566

Query: 495  MLSCETTFRKYVRSIFMDKALVSTSPTPEGNLTKDSFHEFSGVKWLQDKPLSKFEDSQWF 554
             +SCE + +KYVRS F+D A+VSTSPT +GN+T DSFH+FSGVKWL++KPLSKFED+QW 
Sbjct: 567  EISCEPSIKKYVRSHFIDHAVVSTSPTADGNITIDSFHQFSGVKWLREKPLSKFEDAQWL 626

Query: 555  FIEKAEQDKLLQVEIKLPDHAVNELTIACNDAYLKENEGISTRLWNEQRKLILQDAISNF 614
             I+KAE++KL+QV IKLP+  +N+L    N+ Y+ ++   S +LWNEQRKLIL DA   F
Sbjct: 627  LIQKAEEEKLIQVTIKLPEEYLNKLIDQFNELYISDSVSRSAQLWNEQRKLILHDAFFRF 686

Query: 615  LLPSMEKEARALLNARAKNWLLMKYGMQLWNRVSLAPYP-----LSDNATVRPRGVMACC 669
            LLPSMEKEAR++L ++AK+W+LM+YG  LWN+VS+ PY      LS +    PR VMAC 
Sbjct: 687  LLPSMEKEARSVLASKAKHWVLMEYGKALWNKVSVGPYQQKENDLSSDDEAAPR-VMACS 745

Query: 670  WGNGKPGTAFVMLDSRGEFVDVMHAESLALRSQNINDQQRRKNDQKRVLKFLSIHQPSVI 729
            WG G P T FVMLDS GE  DV++  SL LRSQN NDQQR+KNDQ+RVLKF++ HQP VI
Sbjct: 746  WGPGNPQTTFVMLDSSGEVQDVLYTGSLTLRSQNANDQQRKKNDQERVLKFMTDHQPHVI 805

Query: 730  VLGAANASCIRLREDINEIISMMSEDNLESLSQEMKGLPVVVLGDEGLPRLYEDSEISIR 789
            VLGAAN SC RL+EDI E+I  M E+N   +  EM GL  +V GDE LPRLYE+S IS  
Sbjct: 806  VLGAANLSCTRLKEDIYEVIYKMVEENPRDVGHEMDGLS-IVYGDEALPRLYENSRISSE 864

Query: 790  QVP-KKIGIVKRAVALGRYLLNPLAMVATLCGVQKEVLSWKLDPLEKFLTKDEKLEIIEW 848
            Q+P +++GIV+RAVALGRYL NPLAMV TLCG +KE+LSWKL PLE FL  D+KL +IE 
Sbjct: 865  QLPSQQLGIVRRAVALGRYLQNPLAMVTTLCGPRKEILSWKLSPLESFLNPDDKLGMIEQ 924

Query: 849  VMTDITNQVGIDINLAIKHDWLLAPLQFVSGLGPRKAGILHRELLGGTDVRSRRDFV--- 905
            V+ D+TNQVG+DINLAI H+WL APLQF+SGLGPRKA  L R L+    + +R+DF+   
Sbjct: 925  VLVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGSIFTRKDFLTEH 984

Query: 906  KLGLNTKKIFFNAVGFLQI-----SFDDPDFVDSVGSPLDRTRIHPESYSLAEELARAVY 960
            KLG   KK+F NAVGFL++     +     F+D     LD TRIHPESY LA+ELARAVY
Sbjct: 985  KLG---KKVFVNAVGFLRVRRSGLAASSSQFIDL----LDDTRIHPESYILAQELARAVY 1037

Query: 961  RHDNLESSDANSIQVN-AIEYIQNDPKLLESFDVNGYA------DRLETEKGEYRRVTLF 1013
              D    ++ +   +  AIE++++ P  L++ +V  YA      D++E         T +
Sbjct: 1038 EEDGTADANDDDDALEMAIEHVRDRPSYLKNLEVEEYALANNREDKIE---------TFY 1088

Query: 1014 DIKRELLHGFNDPRRPYMEPTQDEEFYMITGEIGAALVEGKRVQATVRHVQSKQAFCVLD 1073
            DIKREL+ GF D R+ Y EP+QDEEFYMI+GE    L EGK VQ TVR VQ+++A C L+
Sbjct: 1089 DIKRELIQGFQDWRKQYEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGLE 1148

Query: 1074 SGITGILYKEDFSDESEDIF-LTKELHVGDVRTCKIKLIDKNRCQVHLTCKLSEMKNDDG 1132
            SG+TGIL KED++D+  DI  L+  LH GD+ TCKIK I KNR QV L CK SEM++D  
Sbjct: 1149 SGMTGILMKEDYTDDWRDIIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSDR- 1207

Query: 1133 EQGFLDIDPYYCQRSIVLPSQQEATDK-KELVNKQFMPRMISHPHFQNITADQAKEFLAD 1191
             Q   D+DPYY +    LPS+Q+ T K KE   K F  RMI HP FQNITAD+A EFL+D
Sbjct: 1208 LQNNQDLDPYYHEDQSCLPSEQDKTRKEKERAKKHFKQRMIVHPRFQNITADEAMEFLSD 1267

Query: 1192 KAIGEYIFHPSLRGPCYLTLSLKIYGGLCAHKDILEGGKSH-DIKSLLGLGETLKVGEEI 1250
            K  GE IF PS RGP YLTL+LKI+ G+ AHKD++EGGK H DI SLL +G+TLK+GE+ 
Sbjct: 1268 KDPGESIFRPSSRGPSYLTLTLKIHEGVYAHKDLVEGGKEHKDITSLLRIGKTLKIGEDT 1327

Query: 1251 FENIDKVIEHYVNPMVVHLKAMISFRKFKKGSKAEVDGLLKLEKEEYPNRIPYGLGISYE 1310
            FE++D+V++ YV+P+V HLK M+++RKF+ G+K EVD LLK+EK E P RI Y  GIS+E
Sbjct: 1328 FEDLDEVMDRYVDPLVTHLKTMLNYRKFRTGTKTEVDELLKMEKAECPMRIVYTFGISHE 1387

Query: 1311 HPGIFVLSYIRSTNPHHEFIAIHPKGFKFRKQIFNNVEQLLGYFQSHIND 1360
            HPG F+L+YIRSTNPHHE+I ++PKGF+FRK++F ++++L+ YFQ HI+D
Sbjct: 1388 HPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDD 1437


>Medtr7g087475.1 | global transcription factor | HC |
            chr7:34047735-34050786 | 20130731
          Length = 634

 Score =  628 bits (1619), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 337/627 (53%), Positives = 440/627 (70%), Gaps = 27/627 (4%)

Query: 745  INEIISMMSEDNLESLSQEMKGLPVVVLGDEGLPRLYEDSEISIRQVP-KKIGIVKRAVA 803
             +++I  M E+N   +  EM GL VV  GDE LPRLYE+S IS  Q+P +K+GIV+RAVA
Sbjct: 20   FDKVIFKMVEENPGDVGHEMDGLSVVY-GDEALPRLYENSRISSEQLPSQKLGIVRRAVA 78

Query: 804  LGRYLLNPLAMVATLCGVQKEVLSWKLDPLEKFLTKDEKLEIIEWVMTDITNQVGIDINL 863
            LGRYL NPLAMVATLCG +KE+LSWKL PLE FL  D+K  +IE VM D+TNQ G+DINL
Sbjct: 79   LGRYLQNPLAMVATLCGPRKEILSWKLSPLESFLNPDDKFGMIEQVMVDVTNQAGLDINL 138

Query: 864  AIKHDWLLAPLQFVSGLGPRKAGILHRELLGGTDVRSRRDFV---KLGLNTKKIFFNAVG 920
            AI H+WL APLQF+SGLGP KA  L R L+    + +R+DF+   KLG    K+F NAVG
Sbjct: 139  AISHEWLFAPLQFISGLGPWKAASLQRSLVRAGAIFTRKDFLTEHKLG---NKVFLNAVG 195

Query: 921  FLQI-----SFDDPDFVDSVGSPLDRTRIHPESYSLAEELARAVYRHDNLESSDANSIQV 975
            FL++     +     F+D     LD TRIHPESY LA+ELARAVY  D+   ++ +   +
Sbjct: 196  FLRVRRSGLAASSSQFIDF----LDDTRIHPESYILAQELARAVYEEDDTADANDDDDAL 251

Query: 976  N-AIEYIQNDPKLLESFDVNGYA-DRLETEKGEYRRVTLFDIKRELLHGFNDPRRPYMEP 1033
              AIE+ ++ P  L++ DV  YA D    +K E    T +DIKREL+  F D R+ Y EP
Sbjct: 252  EMAIEHARDRPSYLKNLDVEEYARDNRRQDKIE----TFYDIKRELIQSFEDWRKQYEEP 307

Query: 1034 TQDEEFYMITGEIGAALVEGKRVQATVRHVQSKQAFCVLDSGITGILYKEDFSDESEDIF 1093
            +QDEEFYMI+GE    L EGK VQ TV  VQ+++A C L+SG+TGIL KED++DE  D+ 
Sbjct: 308  SQDEEFYMISGETEETLAEGKMVQVTVCRVQAQKAICGLESGMTGILMKEDYTDEWRDLN 367

Query: 1094 -LTKELHVGDVRTCKIKLIDKNRCQVHLTCKLSEMKNDDGEQGFLDIDP-YYCQRSIVLP 1151
             L+  LH GD+ TCKIK I KNR QV L CK SEM++D   Q   D+DP Y+  +S +L 
Sbjct: 368  ELSDRLHEGDLLTCKIKSIQKNRYQVLLVCKDSEMRSDR-LQNNQDLDPNYHEDQSSLLR 426

Query: 1152 SQQEATDKKELVNKQFMPRMISHPHFQNITADQAKEFLADKAIGEYIFHPSLRGPCYLTL 1211
             Q +   +KE   K F  RMI HP FQNITAD+A EFL+DK  GE IFHPS  GP YLTL
Sbjct: 427  EQDKTRKEKEGAKKHFKQRMIVHPRFQNITADEAMEFLSDKGPGESIFHPSSHGPSYLTL 486

Query: 1212 SLKIYGGLCAHKDILEGGKSH-DIKSLLGLGETLKVGEEIFENIDKVIEHYVNPMVVHLK 1270
            +LKI+ G+ AHK+I+EGGK H DI SLL +G+TLK+GE+ FE++D+V++ Y++P+V  LK
Sbjct: 487  TLKIHDGVYAHKEIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYLDPLVTRLK 546

Query: 1271 AMISFRKFKKGSKAEVDGLLKLEKEEYPNRIPYGLGISYEHPGIFVLSYIRSTNPHHEFI 1330
             M+++RKF+ G+K EVD LLK EK  +P +I Y  G+S+EHPG F+L+YIRSTNPHHE++
Sbjct: 547  TMLNYRKFRTGTKREVDELLKSEKGLHPMQIVYSFGVSHEHPGGFILTYIRSTNPHHEYV 606

Query: 1331 AIHPKGFKFRKQIFNNVEQLLGYFQSH 1357
             +  KGF+FR ++F +++QL+ YFQ H
Sbjct: 607  GLDTKGFRFRNRMFEDIDQLVAYFQRH 633


>Medtr7g087460.1 | global transcription factor | HC |
           chr7:34038977-34042168 | 20130731
          Length = 744

 Score =  456 bits (1173), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 260/552 (47%), Positives = 334/552 (60%), Gaps = 58/552 (10%)

Query: 214 DIPERMQXXXXXXXXXXXXGMSIEEESSWMLHQLASNINPL------SSEAKSCGLVDTV 267
           DIPERMQ            G SI+EES W++ QL     P       SS+ K    +D  
Sbjct: 232 DIPERMQISEESTGAHSLDGSSIDEESQWIVKQLKHGAIPWIRKKDSSSQNKEELPID-- 289

Query: 268 KREDIDRFLELYH--TNKYDIPFIAMYRKEQCLSLLEDPNRDESDNAVVNDIERXXXXXX 325
            ++DI RFLEL+H    K DIP IAMYRKE+C SLL+D  + E+ +   +   +      
Sbjct: 290 -QDDIARFLELHHHHVQKLDIPLIAMYRKEKCSSLLKDLEQPEAGDDNWDKNIKTPILKW 348

Query: 326 XXXXXXXXXXDKKWLLLQKRKSMLRRYYNKHFEEGCEMSFAVEESSFRKQICDSITSMLE 385
                     D+KWLLLQKRKS L+ YYN  FEE     +  +  +  + + +S+   L+
Sbjct: 349 HKILWALQDLDRKWLLLQKRKSALQLYYNNRFEEESHCVYDEKRLNLNRLLFESVMRSLK 408

Query: 386 KAETEREIDDIDMKFNLYFPPAHEFSDSSYKRPLLKTYFSNCCKAGLWSLASKFG-DPEK 444
           +AE+ERE+DD+D KFNL+FPP     D  YKRP  K+ +S   KAGLW +AS+FG   E+
Sbjct: 409 EAESEREVDDVDSKFNLHFPPGEAGVDGQYKRPKRKSMYSTFSKAGLWEVASRFGCSSEQ 468

Query: 445 FGSLLTLKKLGMDVEEDPAESPEEIASIYNCETFQTSEAVLKGARHMAVVMLSCETTFRK 504
            G  L+L +L     EDP E+PEE+AS + C  + T E  LK ARHM      C +T   
Sbjct: 469 LGLCLSLVQL--QELEDPKETPEEVASNFTCAMYDTLEEALKCARHMV-----CISTL-- 519

Query: 505 YVRSIFMDKALVSTSPTPEGNLTKDSFHEFSGVKWLQDKPLSKFEDSQWFFIEKAEQDKL 564
                     LVSTSPT +GN+T DS H+FSG+KWL++KPLSKFED+QW  I+KAE++KL
Sbjct: 520 ----------LVSTSPTADGNITIDSLHQFSGLKWLREKPLSKFEDAQWLLIQKAEEEKL 569

Query: 565 LQVEIKLPDHAVNELTIACNDAYLKENEGISTRLWNEQRKLILQDAISNFLLPSMEKEAR 624
           +QV IKLP+  +N+                S +LWNEQRKLIL DA   FLLPSMEKEAR
Sbjct: 570 IQVTIKLPEEYLNK----------------SAQLWNEQRKLILHDAFFRFLLPSMEKEAR 613

Query: 625 ALLNARAKNWLLMKYGMQLWNRVSLAPYPLSDN-------ATVRPRGVMACCWGNGKPGT 677
            +L  +AK+W+ M+YG   WN+VS+ PY   +N       A  R   VMAC WG G P T
Sbjct: 614 GILGNKAKHWVRMEYGKAFWNKVSVRPYQQKENDHSSDDEAATR---VMACSWGPGNPQT 670

Query: 678 AFVMLDSRGEFVDVMHAESLALRSQNINDQQRRKNDQKRVLKFLSIHQPSVIVLGAANAS 737
            FVMLDS GE  DV++  SL L+SQN NDQQR+KNDQ+RVLKF++ HQP VIVLGAAN S
Sbjct: 671 TFVMLDSSGEVQDVLYTGSLTLKSQNPNDQQRKKNDQERVLKFITDHQPHVIVLGAANLS 730

Query: 738 CIRLREDINEII 749
           C  + E  N+II
Sbjct: 731 CTSV-EKSNDII 741