Miyakogusa Predicted Gene

Lj0g3v0206589.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0206589.1 Non Characterized Hit- tr|B9SS09|B9SS09_RICCO
Pentatricopeptide repeat-containing protein, putative ,60,0.00000001,
,CUFF.13217.1
         (70 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g098940.1 | PPR containing plant-like protein | HC | chr4:...    64   3e-11

>Medtr4g098940.1 | PPR containing plant-like protein | HC |
          chr4:40871758-40869320 | 20130731
          Length = 575

 Score = 63.9 bits (154), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 42/70 (60%)

Query: 1  MATMAKGAWLHCSSDLKTHHQQLLLAVESCHGIQQFNQVHSQLIVRGLFHHPLVAGRAVK 60
          M+   K AW   ++  +   +QLL A+ES  G Q FNQ+H+QLI+  L  HPL++  A+K
Sbjct: 1  MSPRMKHAWTCNTTRRRNSPEQLLSALESTTGTQHFNQIHTQLIINNLIQHPLLSTTAIK 60

Query: 61 KLCSDPLNAP 70
          KL S P   P
Sbjct: 61 KLSSHPRTTP 70