Miyakogusa Predicted Gene

Lj0g3v0205939.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0205939.1 tr|Q9C8Z3|Q9C8Z3_ARATH Agenet domain-containing
protein OS=Arabidopsis thaliana GN=F5E6.15 PE=4
SV=1,39.73,9e-19,Tudor-like domain present in plant
sequences,Tudor-like, plant; seg,NULL; Agenet,Agenet-like
domain,CUFF.13160.1
         (164 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g024810.1 | agenet domain protein | LC | chr4:8410108-8412...    54   6e-08
Medtr1g084210.1 | agenet domain protein | HC | chr1:37618390-376...    54   8e-08
Medtr4g026550.1 | agenet domain protein | LC | chr4:9140128-9137...    49   2e-06
Medtr4g023710.1 | agenet domain protein | LC | chr4:8042523-8040...    48   5e-06
Medtr4g024680.1 | F-box/RNI superfamily protein | LC | chr4:8360...    47   8e-06

>Medtr4g024810.1 | agenet domain protein | LC | chr4:8410108-8412053
           | 20130731
          Length = 469

 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 11/132 (8%)

Query: 5   FNKGEGVEVIKQNENDEY-SYFPATVLRPPSKNNNMVFVEYQAPTKSRNREYVNVASVRP 63
           F+ G  VEV        Y S+F AT++R  S +   + VE+    +      V +  +RP
Sbjct: 7   FDPGNKVEVSNDCSGGIYRSWFTATIIRWFSSDK--LLVEFD--DEDVKPTVVGLHQLRP 62

Query: 64  KLPYELNPW-FKVGDSVDAFRPNVTAFSWCPATVSDILENSTYRVDFRGHSAAV-DHCSL 121
               E++ W  K+GD V+AFR +     W    VS+ L N ++RV F      V     L
Sbjct: 63  VPTLEIDDWEVKIGDKVEAFRKH----RWWEGRVSEDLGNGSFRVCFTDSGEIVFPKDLL 118

Query: 122 RLHRDWVNGNWV 133
           R+HR W+N NWV
Sbjct: 119 RVHRKWINHNWV 130


>Medtr1g084210.1 | agenet domain protein | HC |
           chr1:37618390-37617540 | 20130731
          Length = 199

 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 12/135 (8%)

Query: 5   FNKGEGVEVIKQNENDEYSYFPATVLRPPSKNNNMVFVEYQAPTKSRN---REYVNVASV 61
           F  G  VEV    +  + ++F  T++    K +    VEY+A     +   RE +N+  +
Sbjct: 56  FVVGALVEVCSDEKGLKGAWFLGTIVEL--KRHFRFVVEYEALIDDDSKPLREELNIRHI 113

Query: 62  RPKLPYELN-PWFKVGDSVDAFRPNVTAFSWCPATVSDILENSTYRVDFRGHSAAVD--H 118
           RP+ P   +   FK  D VDAF  +     W    V+ ++ +S Y V FR     ++  H
Sbjct: 114 RPRPPKTDDVAEFKFFDEVDAFHND----GWWVGIVTKVVGDSKYVVFFRSFKEEMEFHH 169

Query: 119 CSLRLHRDWVNGNWV 133
             LRLH+DW++  WV
Sbjct: 170 SQLRLHQDWMDRRWV 184


>Medtr4g026550.1 | agenet domain protein | LC | chr4:9140128-9137874
           | 20130731
          Length = 497

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 21/134 (15%)

Query: 8   GEGVEV-IKQNENDEYSYFPATVLRPPSKNNNMVFVEYQ----APTKSRNREYVNVASVR 62
           G  VEV I +      S+FPAT+LR  S  ++++ V+Y      PT       V +  +R
Sbjct: 4   GNKVEVSIDRGSGISCSWFPATILRWFS--SDILLVQYDDMDVKPT------VVGLHQLR 55

Query: 63  PKLPYELNPWF--KVGDSVDAFRPNVTAFSWCPATVSDILENSTYRVDFRGHSAAV-DHC 119
           P +P  ++ ++  K+GD V+AFR +     W    VS  L N  + V F      V    
Sbjct: 56  P-VPTPVSDYWEVKIGDKVEAFRKH----RWWEGRVSADLGNGRFLVCFTDSEEMVFPKD 110

Query: 120 SLRLHRDWVNGNWV 133
            LR+HR W+N NWV
Sbjct: 111 LLRIHRQWINHNWV 124


>Medtr4g023710.1 | agenet domain protein | LC | chr4:8042523-8040576
           | 20130731
          Length = 490

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 62/136 (45%), Gaps = 19/136 (13%)

Query: 5   FNKGEGVEV-IKQNENDEYSYFPATVLRPPSKNNNMVFVEYQ----APTKSRNREYVNVA 59
           F+ G  VEV I        S+F AT+++  S +   + VEY      PT       V + 
Sbjct: 7   FHPGNKVEVSIDHGIGIYCSWFTATIVKWVSSDK--LLVEYDDVDVKPTT------VGLH 58

Query: 60  SVRPKLPYELNPW-FKVGDSVDAFRPNVTAFSWCPATVSDILENSTYRVDFRGHSAAV-D 117
            +RP    E + W  K+GD V+AFR       W    V + L N ++RV F      V  
Sbjct: 59  QLRPVPTPESDDWEVKIGDKVEAFRKQ----RWWEGRVIEDLGNGSFRVCFTDSEEIVFP 114

Query: 118 HCSLRLHRDWVNGNWV 133
              LR+HR W+N NWV
Sbjct: 115 KDLLRVHRQWINHNWV 130


>Medtr4g024680.1 | F-box/RNI superfamily protein | LC |
           chr4:8360372-8355301 | 20130731
          Length = 856

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 13/115 (11%)

Query: 23  SYFPATVLRPPSKNNNMVFVEYQAPTKSRNREYVNVASVRPKLPYELNPW-FKVGDSVDA 81
           S+FPAT++R  S N    FV+Y     +     V V  +RP +P  +  W  K+GD V+A
Sbjct: 20  SWFPATIIRRVSSNK--FFVKYDH--LNVRPAVVGVHQLRP-VPRTVRDWEVKIGDKVEA 74

Query: 82  FRPNVTAFSWCPATVSDILENS--TYRVDFRG-HSAAVDHCSLRLHRDWVNGNWV 133
           F        W    VS+++ ++   + V F       V    LR+HR W+N NWV
Sbjct: 75  FGKQ----RWREGHVSEVIGSTGKLFSVRFNDWKEMIVSKEKLRVHRKWINHNWV 125