Miyakogusa Predicted Gene

Lj0g3v0205889.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0205889.1 tr|I7MPD6|I7MPD6_COXBE 30S ribosomal protein S6
OS=Coxiella burnetii 'MSU Goat Q177' GN=rpsF PE=3
SV,48.48,8e-19,Ribosomal protein S6,Ribosomal protein S6;
Ribosomal_S6,Ribosomal protein S6, plastid/chloroplast; S,CUFF.13156.1
         (269 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g033490.1 | 30S ribosomal protein S6 | HC | chr2:12747919-...   337   6e-93

>Medtr2g033490.1 | 30S ribosomal protein S6 | HC |
           chr2:12747919-12750882 | 20130731
          Length = 294

 Score =  337 bits (865), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 174/249 (69%), Positives = 204/249 (81%), Gaps = 7/249 (2%)

Query: 1   MEALFQGSC--LAPSYPLLELPKSTTML-TNCVKFNLSHNPCFIFANSSRPFSAQSKPRK 57
           MEALF+GS   L  S P    PK+ TML +N ++FN  ++     ++ SR FS Q+ PRK
Sbjct: 1   MEALFKGSSYLLPSSKP----PKTITMLASNPLRFNFPNHHLSSSSSFSRQFSLQNNPRK 56

Query: 58  PFSVIVNAQKKDKKEDHHSFVSKPDESAGFFPEAVLLKKKIVEEDGEFLPEFEDAEERKL 117
            FS+I+NA+KKDKKED HSFV K  E+ GFFPE+VLLKKK VEEDG+ LPEFED +ERKL
Sbjct: 57  SFSLIMNARKKDKKEDTHSFVPKSYEATGFFPESVLLKKKTVEEDGKLLPEFEDDDERKL 116

Query: 118 FESLMLEMDSDLNVELLRHYEIVYLIHEKHEEEVAAVNEKIQDFLREKKGTVWRFSDWGM 177
           +ESL L++++D++VELLRHYEIVYLIHEKH EEV AVNEK+QDFLREKKG VWRFSDWGM
Sbjct: 117 YESLKLDVETDMDVELLRHYEIVYLIHEKHAEEVVAVNEKVQDFLREKKGRVWRFSDWGM 176

Query: 178 RTLAYKIKKANKAHYILMNIEMDAKYINEFKTLLDQDERVIRHLVVKRDEAITEDCPPPP 237
           R LAYKI+KAN AHYILMN EMDAKYINE KTLLD+DERVIRHLV+KRDEAITEDCPPPP
Sbjct: 177 RKLAYKIQKANNAHYILMNFEMDAKYINELKTLLDRDERVIRHLVIKRDEAITEDCPPPP 236

Query: 238 EFHTLGASV 246
           EF+T   + 
Sbjct: 237 EFNTFVGNT 245