Miyakogusa Predicted Gene

Lj0g3v0205819.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0205819.1 tr|B9ILT3|B9ILT3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_669375 PE=4
SV=1,34.65,0.00000000000006,seg,NULL; coiled-coil,NULL; SUBFAMILY NOT
NAMED,NULL; GOLGIN-84,NULL,CUFF.13153.1
         (452 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g088595.1 | coiled-coil vesicle tethering protein, putativ...   573   e-163

>Medtr6g088595.1 | coiled-coil vesicle tethering protein, putative |
           HC | chr6:33723205-33733399 | 20130731
          Length = 711

 Score =  573 bits (1477), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 322/448 (71%), Positives = 365/448 (81%), Gaps = 8/448 (1%)

Query: 1   MASWLKAAEDLFEVVDRRAKLVATDL-EDQSDSKSPAXXXXXXXXXXKGTKRKPKTKNGQ 59
           MASWLK AEDLFEVVDRRAKLVA +  E+QSDSKSPA          K  K KPK + GQ
Sbjct: 1   MASWLKVAEDLFEVVDRRAKLVANETGEEQSDSKSPASNGQGSQGKRK--KSKPKAQKGQ 58

Query: 60  SNSPSITTDATKEDSGFPAAL--VDVTTPSDKVDLVAENDGDASVSTDQPKKEQQTTDAT 117
           S+S +I +D TKE +  PAA   V VTTPSDKVD VA+NDG  S+ST+Q  KEQQ TDA 
Sbjct: 59  SDSSTIISDTTKEKNESPAATSDVSVTTPSDKVDPVAKNDGSDSISTNQ-SKEQQPTDAV 117

Query: 118 SPILGTSLSEMLTDDVGKHXXXXXXXXXXXXAGEVATVSANGEPTRENASDSHEVDPPPA 177
           SP+LGTSLS  L  D  KH              +V T S N EP +E ASD +EVDP P+
Sbjct: 118 SPVLGTSLSTKLASDTVKHDTGDVEVLGNDTDVDVTTTSPNNEPVKEKASDINEVDPSPS 177

Query: 178 PKGIKVPEDEPTTSSGQIIKSGDSDANQNMDQEKSESVTSDLAPN-SETAHKDSVIKVEP 236
           PKGIK P  EPT S+ QI K+ D ++NQNMDQE++E+V  D+AP+ S+T  KDS IK EP
Sbjct: 178 PKGIKDPNHEPT-STDQITKAVDLESNQNMDQEETETVADDVAPSTSDTILKDSDIKAEP 236

Query: 237 IENQKSHKDHKTDISPKKVQDQLDEAQGLLKTTKSTGQSKEARLARVCAGLSSRLQEYKS 296
           I N+KS +DHKTDISPKK+Q+QL+EAQGLLKTT+STGQSKEARLARVCAGLSSRLQEYKS
Sbjct: 237 IVNRKSQEDHKTDISPKKLQEQLEEAQGLLKTTRSTGQSKEARLARVCAGLSSRLQEYKS 296

Query: 297 ENAQLEELLTAERELSKSYEASIKQLQKNLSESKREVTRVESNMADALSAKNAEIEALLS 356
           ENAQLEELLTAERELSKSYEASIKQLQ++LSESK+EVTRVESNMADAL+AKNAEIEA+LS
Sbjct: 297 ENAQLEELLTAERELSKSYEASIKQLQRDLSESKKEVTRVESNMADALAAKNAEIEAVLS 356

Query: 357 SMEAVKKQAALSEGNLASMQANMESMMRNRELTETRMMQALREELASTERRAEEERVAHN 416
           S+EA+K+QAALSEG+LASMQANMESMMRNRELTETRMMQALREELAS ERRAEEER AHN
Sbjct: 357 SVEAIKRQAALSEGSLASMQANMESMMRNRELTETRMMQALREELASVERRAEEERAAHN 416

Query: 417 ATKMAAMERQVELEHRAVESSTALARIQ 444
           ATK+A+MER+VELEHRAVESSTALARIQ
Sbjct: 417 ATKLASMEREVELEHRAVESSTALARIQ 444