Miyakogusa Predicted Gene

Lj0g3v0205029.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0205029.1 tr|C1E6K7|C1E6K7_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17)
GN=MICPUN_108292,40,5e-19,coiled-coil,NULL; MEMBRIN,NULL; VESICLE
TRANSPORT V-SNARE PROTEIN VTI1-RELATED,NULL; no
description,,CUFF.13094.1
         (141 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g450200.1 | Bos1/membrin family Qb-SNARE protein | HC | ch...   231   1e-61
Medtr5g090520.1 | Bos1/membrin family Qb-SNARE protein | HC | ch...   218   1e-57
Medtr5g090520.2 | Bos1/membrin family Qb-SNARE protein | HC | ch...   199   8e-52
Medtr3g450200.3 | Bos1/membrin family Qb-SNARE protein | HC | ch...   174   3e-44
Medtr3g450200.2 | Bos1/membrin family Qb-SNARE protein | HC | ch...   172   7e-44

>Medtr3g450200.1 | Bos1/membrin family Qb-SNARE protein | HC |
           chr3:17236521-17232823 | 20130731
          Length = 230

 Score =  231 bits (590), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 116/142 (81%), Positives = 130/142 (91%), Gaps = 1/142 (0%)

Query: 1   MDRLWGSVGGKPQRDLWRRKVEQIAEEAASLKESLDKFNLRNQKRISEAKERAELLGRAN 60
           MDRLW S+  KPQRDLW+RKVEQIAEEA SLKESLDK+N R+QKR  EAKERAELLGR N
Sbjct: 69  MDRLWRSLAAKPQRDLWKRKVEQIAEEAESLKESLDKYNSRSQKRSREAKERAELLGRMN 128

Query: 61  GDS-HVMRIFDEEAQAMQSVRTSARELENANAIGEAILSSIHGQRERLKSAHRKALDILN 119
           GDS HV++IFD++AQAM SVR+S++ELENANA+GEAILSS+HGQRERLKSA RKALD+LN
Sbjct: 129 GDSSHVLQIFDDDAQAMHSVRSSSKELENANALGEAILSSMHGQRERLKSAQRKALDVLN 188

Query: 120 TVGISNSVLRLIERRNRVDQWI 141
           TVGISN VLRLIERRNRVDQWI
Sbjct: 189 TVGISNRVLRLIERRNRVDQWI 210


>Medtr5g090520.1 | Bos1/membrin family Qb-SNARE protein | HC |
           chr5:39425990-39422718 | 20130731
          Length = 222

 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 112/142 (78%), Positives = 123/142 (86%), Gaps = 1/142 (0%)

Query: 1   MDRLWGSVGGKPQRDLWRRKVEQIAEEAASLKESLDKFNLRNQKRISEAKERAELLGRAN 60
           M +L  S+G K QRDLW RKVEQIAEEA SL+ESL+K+N RN KR+ EAKER ELLGR N
Sbjct: 61  MSQLSRSIGAKSQRDLWNRKVEQIAEEAESLRESLEKYNSRNHKRMMEAKEREELLGRVN 120

Query: 61  GD-SHVMRIFDEEAQAMQSVRTSARELENANAIGEAILSSIHGQRERLKSAHRKALDILN 119
           GD SHV+RIFD++ QAM SVR SARELENANA+GE ILSSIHGQRERLKSAHRKALD+LN
Sbjct: 121 GDPSHVLRIFDDDTQAMLSVRNSARELENANALGETILSSIHGQRERLKSAHRKALDVLN 180

Query: 120 TVGISNSVLRLIERRNRVDQWI 141
           T GISN VLRLIERRNRVDQWI
Sbjct: 181 TAGISNRVLRLIERRNRVDQWI 202


>Medtr5g090520.2 | Bos1/membrin family Qb-SNARE protein | HC |
           chr5:39425990-39422718 | 20130731
          Length = 204

 Score =  199 bits (506), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 102/124 (82%), Positives = 111/124 (89%), Gaps = 1/124 (0%)

Query: 19  RKVEQIAEEAASLKESLDKFNLRNQKRISEAKERAELLGRANGD-SHVMRIFDEEAQAMQ 77
           RKVEQIAEEA SL+ESL+K+N RN KR+ EAKER ELLGR NGD SHV+RIFD++ QAM 
Sbjct: 61  RKVEQIAEEAESLRESLEKYNSRNHKRMMEAKEREELLGRVNGDPSHVLRIFDDDTQAML 120

Query: 78  SVRTSARELENANAIGEAILSSIHGQRERLKSAHRKALDILNTVGISNSVLRLIERRNRV 137
           SVR SARELENANA+GE ILSSIHGQRERLKSAHRKALD+LNT GISN VLRLIERRNRV
Sbjct: 121 SVRNSARELENANALGETILSSIHGQRERLKSAHRKALDVLNTAGISNRVLRLIERRNRV 180

Query: 138 DQWI 141
           DQWI
Sbjct: 181 DQWI 184


>Medtr3g450200.3 | Bos1/membrin family Qb-SNARE protein | HC |
           chr3:17236521-17233294 | 20130731
          Length = 210

 Score =  174 bits (440), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 86/109 (78%), Positives = 99/109 (90%), Gaps = 1/109 (0%)

Query: 1   MDRLWGSVGGKPQRDLWRRKVEQIAEEAASLKESLDKFNLRNQKRISEAKERAELLGRAN 60
           MDRLW S+  KPQRDLW+RKVEQIAEEA SLKESLDK+N R+QKR  EAKERAELLGR N
Sbjct: 69  MDRLWRSLAAKPQRDLWKRKVEQIAEEAESLKESLDKYNSRSQKRSREAKERAELLGRMN 128

Query: 61  GD-SHVMRIFDEEAQAMQSVRTSARELENANAIGEAILSSIHGQRERLK 108
           GD SHV++IFD++AQAM SVR+S++ELENANA+GEAILSS+HGQRERLK
Sbjct: 129 GDSSHVLQIFDDDAQAMHSVRSSSKELENANALGEAILSSMHGQRERLK 177


>Medtr3g450200.2 | Bos1/membrin family Qb-SNARE protein | HC |
           chr3:17236499-17232869 | 20130731
          Length = 215

 Score =  172 bits (437), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 86/109 (78%), Positives = 99/109 (90%), Gaps = 1/109 (0%)

Query: 1   MDRLWGSVGGKPQRDLWRRKVEQIAEEAASLKESLDKFNLRNQKRISEAKERAELLGRAN 60
           MDRLW S+  KPQRDLW+RKVEQIAEEA SLKESLDK+N R+QKR  EAKERAELLGR N
Sbjct: 69  MDRLWRSLAAKPQRDLWKRKVEQIAEEAESLKESLDKYNSRSQKRSREAKERAELLGRMN 128

Query: 61  GD-SHVMRIFDEEAQAMQSVRTSARELENANAIGEAILSSIHGQRERLK 108
           GD SHV++IFD++AQAM SVR+S++ELENANA+GEAILSS+HGQRERLK
Sbjct: 129 GDSSHVLQIFDDDAQAMHSVRSSSKELENANALGEAILSSMHGQRERLK 177