Miyakogusa Predicted Gene

Lj0g3v0205009.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0205009.1 Non Characterized Hit- tr|Q9SV86|Q9SV86_ARATH
Putative uncharacterized protein AT4g10360
OS=Arabidop,37.7,2e-19,SUBFAMILY NOT NAMED,NULL; CT120 PROTEIN,NULL;
TRAM_LAG1_CLN8,TRAM/LAG1/CLN8 homology domain; TLC,TRA,CUFF.13082.1
         (150 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g450410.1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain...   242   1e-64
Medtr5g090550.1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain...   239   6e-64
Medtr3g063070.1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain...    94   5e-20
Medtr3g063070.2 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain...    94   5e-20

>Medtr3g450410.1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain
           protein | HC | chr3:17356926-17350940 | 20130731
          Length = 274

 Score =  242 bits (617), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 110/147 (74%), Positives = 134/147 (91%)

Query: 4   MLDSKEIMDLKSYQNQANIFVKEYILADSLVPYTSVIGGIFACKMVYDLIHVIGTNYFKS 63
           ML+SKE+M L+SYQNQAN+FVK+Y+LADS +PYTSV GGIFACK+VYDL  +IGTN FK+
Sbjct: 1   MLESKEMMSLESYQNQANLFVKDYLLADSFIPYTSVFGGIFACKLVYDLTQLIGTNSFKT 60

Query: 64  YSSFAKLQRIEWNNRAISTIHAIFITAMALHYVFCSDLFADDQSTELITLRNSSLSTFTL 123
           YSS +K+QRIEWNNRA+STIH+IFIT M+L+ VFCS+LF+D+QST+ IT+R+SSLSTF L
Sbjct: 61  YSSLSKIQRIEWNNRAMSTIHSIFITTMSLYMVFCSNLFSDNQSTDPITVRSSSLSTFAL 120

Query: 124 GVSVGYFIADLGMIFWFFPSLGGYEYV 150
           GVSVGYF+AD  MIFW+FPSLGGYEYV
Sbjct: 121 GVSVGYFLADFVMIFWYFPSLGGYEYV 147


>Medtr5g090550.1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain
           protein | HC | chr5:39442711-39437877 | 20130731
          Length = 274

 Score =  239 bits (610), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 109/147 (74%), Positives = 130/147 (88%)

Query: 4   MLDSKEIMDLKSYQNQANIFVKEYILADSLVPYTSVIGGIFACKMVYDLIHVIGTNYFKS 63
           ML SKEIM  KSYQNQAN+FVKEY+LAD L+PYTS+IGGIFACKMVYDL  +  T +FKS
Sbjct: 1   MLASKEIMKFKSYQNQANLFVKEYLLADPLIPYTSIIGGIFACKMVYDLTQLFSTIHFKS 60

Query: 64  YSSFAKLQRIEWNNRAISTIHAIFITAMALHYVFCSDLFADDQSTELITLRNSSLSTFTL 123
           YSS  ++QRIEWNNRA+STIH+IFIT M+L+ VFCS+L++D +S EL+T R+S+LSTF L
Sbjct: 61  YSSLTRIQRIEWNNRAMSTIHSIFITTMSLYLVFCSNLYSDSESAELLTERSSALSTFAL 120

Query: 124 GVSVGYFIADLGMIFWFFPSLGGYEYV 150
           GVSVGYF+ADLGMIFWFFP+LGGYEYV
Sbjct: 121 GVSVGYFMADLGMIFWFFPALGGYEYV 147


>Medtr3g063070.1 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain
           protein | HC | chr3:28547655-28542831 | 20130731
          Length = 264

 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 61/113 (53%)

Query: 38  SVIGGIFACKMVYDLIHVIGTNYFKSYSSFAKLQRIEWNNRAISTIHAIFITAMALHYVF 97
           SV  GI    +VY L     +  F  Y   +   ++EWNNR  ST HA F +  +L+ + 
Sbjct: 22  SVFSGIIFSLIVYQLTAAFSSRLFIGYRKLSSAGKVEWNNRGFSTFHAFFASFTSLYLLI 81

Query: 98  CSDLFADDQSTELITLRNSSLSTFTLGVSVGYFIADLGMIFWFFPSLGGYEYV 150
            SDLF DD   +L+  R S+ S   L  S GYF+ DL  I W FP+LGG EYV
Sbjct: 82  LSDLFKDDSQEKLVVNRTSTFSNSVLSFSTGYFLTDLAFIIWNFPALGGLEYV 134


>Medtr3g063070.2 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain
           protein | HC | chr3:28547875-28542849 | 20130731
          Length = 264

 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 61/113 (53%)

Query: 38  SVIGGIFACKMVYDLIHVIGTNYFKSYSSFAKLQRIEWNNRAISTIHAIFITAMALHYVF 97
           SV  GI    +VY L     +  F  Y   +   ++EWNNR  ST HA F +  +L+ + 
Sbjct: 22  SVFSGIIFSLIVYQLTAAFSSRLFIGYRKLSSAGKVEWNNRGFSTFHAFFASFTSLYLLI 81

Query: 98  CSDLFADDQSTELITLRNSSLSTFTLGVSVGYFIADLGMIFWFFPSLGGYEYV 150
            SDLF DD   +L+  R S+ S   L  S GYF+ DL  I W FP+LGG EYV
Sbjct: 82  LSDLFKDDSQEKLVVNRTSTFSNSVLSFSTGYFLTDLAFIIWNFPALGGLEYV 134