Miyakogusa Predicted Gene

Lj0g3v0204759.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0204759.1 Non Characterized Hit- tr|D8R9X3|D8R9X3_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,39.84,1e-18,APO,APO domain; APO_RNA-bind,APO domain;
EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1,NULL,CUFF.13074.1
         (130 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g072520.1 | APO RNA-binding protein | HC | chr5:30879261-3...   150   3e-37
Medtr2g088390.1 | APO RNA-binding protein | HC | chr2:37254350-3...   143   5e-35
Medtr2g067610.1 | APO RNA-binding protein | HC | chr2:28298590-2...   142   7e-35
Medtr1g054885.1 | photosystem one accumulation protein | HC | ch...   142   1e-34
Medtr6g059930.2 | APO RNA-binding protein | HC | chr6:20582557-2...   135   1e-32
Medtr6g059930.1 | APO RNA-binding protein | HC | chr6:20583169-2...   134   1e-32
Medtr2g088750.1 | APO RNA-binding protein | HC | chr2:37418951-3...    94   3e-20

>Medtr5g072520.1 | APO RNA-binding protein | HC |
           chr5:30879261-30876789 | 20130731
          Length = 442

 Score =  150 bits (379), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 72/129 (55%), Positives = 91/129 (70%), Gaps = 1/129 (0%)

Query: 1   MKAWEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATI 60
           + +W +M +GA K+M+ Y   TCGYCPEVQVGPKGH++R C+A KHQ R+G HAWQEAT+
Sbjct: 169 LDSWFEMISGAKKIMEKYVVNTCGYCPEVQVGPKGHKLRMCKASKHQSRNGLHAWQEATL 228

Query: 61  NDLVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEKNYAHSMREDVVV 120
           +D+V P +V+H+ D  +G  L + +KRYYG  PAVVEL   AGA V   Y   MR DVV 
Sbjct: 229 DDIVGPNFVWHVED-LNGPALNNNIKRYYGKAPAVVELCVHAGAPVPDQYKSMMRLDVVS 287

Query: 121 PEMDEEKLV 129
           PE DE  LV
Sbjct: 288 PERDEVDLV 296



 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 25  YCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATINDLVPPVYVYHIGDQQSGKPLV-H 83
           +C EV +G  GH +R C   K  +R   H W+   + D+V     +H+ D+  GKP V H
Sbjct: 1   FCNEVHIGYVGHEIRTCTGPKSWLRSATHVWKRGGVQDVVCFPKCFHLYDR-VGKPRVGH 59

Query: 84  ELKRYYGMLPAVVELFAQAGATVEK 108
           + +     +PA++EL  QAG  ++K
Sbjct: 60  DERFSVPRIPAIIELCIQAGLDLKK 84


>Medtr2g088390.1 | APO RNA-binding protein | HC |
           chr2:37254350-37249092 | 20130731
          Length = 447

 Score =  143 bits (360), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 90/131 (68%), Gaps = 2/131 (1%)

Query: 1   MKAWEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATI 60
           ++AWE+M  G  +LM  Y  + CGYCPE+ VGP GH+ +NC A KHQ R+GQH WQ A +
Sbjct: 318 LQAWEQMRKGTKRLMRMYHVRVCGYCPEIHVGPSGHKAQNCGAHKHQQRNGQHGWQSAVL 377

Query: 61  NDLVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEKNYAHSMREDVVV 120
           +DL+PP +V+H+ D  +G PL  ELK +YG  PAVVE+  QAGA + + Y  +MR DV +
Sbjct: 378 DDLIPPRFVWHVPD-VNGPPLERELKNFYGQAPAVVEMCIQAGAALPEQYKSTMRLDVGI 436

Query: 121 PE-MDEEKLVV 130
           P  + E ++VV
Sbjct: 437 PSTLREAEMVV 447



 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 1/113 (0%)

Query: 7   MCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATINDLVPP 66
           +     KL+       CG+C E+ VGP GH  ++C+  +  +R G H W  A + D++ P
Sbjct: 154 LINNLKKLLKVVPVHACGWCSEIHVGPVGHPFKSCKGTQSNIRKGIHEWTNAHVEDILIP 213

Query: 67  VYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEKNYAHSMREDVV 119
           +  +H+ D+  GK + HE +     +PAVVEL  QAG  + +      R+ ++
Sbjct: 214 IDAFHLYDRL-GKRITHEQRFSIPRIPAVVELCIQAGVKIREFPTKRRRKPII 265


>Medtr2g067610.1 | APO RNA-binding protein | HC |
           chr2:28298590-28300383 | 20130731
          Length = 329

 Score =  142 bits (359), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 90/131 (68%), Gaps = 2/131 (1%)

Query: 1   MKAWEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATI 60
           ++AWE+M  G  +LM  Y  + CGYCPE+ VGP GH+ +NC A KHQ R+GQH WQ A +
Sbjct: 200 LQAWEQMRKGTKRLMRMYHVRVCGYCPEIHVGPSGHKAQNCGAHKHQQRNGQHGWQSAVL 259

Query: 61  NDLVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEKNYAHSMREDVVV 120
           +DL+PP +V+H+ D  +G PL  ELK +YG  PAVVE+  QAGA + + Y  +MR DV +
Sbjct: 260 DDLIPPRFVWHVPD-VNGPPLERELKNFYGQAPAVVEMCIQAGAALPEQYKSTMRLDVGI 318

Query: 121 PE-MDEEKLVV 130
           P  + E ++VV
Sbjct: 319 PSTLREAEMVV 329



 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 1/113 (0%)

Query: 7   MCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATINDLVPP 66
           +     KL+       CG+C E+ VGP GH  ++C+  +  +R G H W  A + D++ P
Sbjct: 36  LINNLKKLLKVVPVHACGWCSEIHVGPVGHPFKSCKGTQSNIRKGIHEWTNAHVEDILIP 95

Query: 67  VYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEKNYAHSMREDVV 119
           +  +H+ D + GK + HE +     +PAVVEL  QAG  + +      R+ ++
Sbjct: 96  IDAFHLYD-RLGKRITHEQRFSIPRIPAVVELCIQAGVKIREFPTKRRRKPII 147


>Medtr1g054885.1 | photosystem one accumulation protein | HC |
           chr1:24065884-24068179 | 20130731
          Length = 82

 Score =  142 bits (357), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 70/83 (84%), Positives = 74/83 (89%), Gaps = 1/83 (1%)

Query: 48  MRDGQHAWQEATINDLVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVE 107
           MRDGQH WQEATIND VPPVYVYHI DQQ GKPLV+ELKRYYGMLPAVVELF+QAGA VE
Sbjct: 1   MRDGQHEWQEATINDFVPPVYVYHIRDQQPGKPLVNELKRYYGMLPAVVELFSQAGAPVE 60

Query: 108 KNYAHSMREDVVVPEMDEEKLVV 130
           K Y H+MR DVVVP+MDEEK VV
Sbjct: 61  KIYGHTMR-DVVVPDMDEEKWVV 82


>Medtr6g059930.2 | APO RNA-binding protein | HC |
           chr6:20582557-20579088 | 20130731
          Length = 419

 Score =  135 bits (339), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 86/129 (66%), Gaps = 1/129 (0%)

Query: 1   MKAWEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATI 60
           + A++ +  G  KLM  Y  + CGYC EV VGP GH  + C +FKHQ RDG+H WQ+AT+
Sbjct: 291 IDAYQTVRKGVRKLMKKYTVKACGYCSEVHVGPWGHNAKLCGSFKHQWRDGKHGWQDATL 350

Query: 61  NDLVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEKNYAHSMREDVVV 120
           ++++PP YV+H+ D  +G P+   LKRYYG  PAVVE+  QAGA +   Y   MR D+V+
Sbjct: 351 DEVLPPNYVWHVRD-TNGPPIKAALKRYYGKAPAVVEVCVQAGARIPAEYKPLMRLDIVI 409

Query: 121 PEMDEEKLV 129
           P+ DE  ++
Sbjct: 410 PDTDEAGMI 418



 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 1/104 (0%)

Query: 3   AWEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATIND 62
           AW+ +  G S+L+       C  C EV V   GH + +C+      R   HAW    +ND
Sbjct: 121 AWKLLIKGLSQLLHVIPAYGCSECSEVHVAQTGHSILDCEGRTSSTRHSSHAWVRGNVND 180

Query: 63  LVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATV 106
           ++ P+  YH+ D   GK ++H+ +  Y  +PAVVEL  QAG  +
Sbjct: 181 ILVPIESYHLFD-PFGKRIMHDTRFEYDRIPAVVELCIQAGVDI 223


>Medtr6g059930.1 | APO RNA-binding protein | HC |
           chr6:20583169-20579100 | 20130731
          Length = 451

 Score =  134 bits (338), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 86/129 (66%), Gaps = 1/129 (0%)

Query: 1   MKAWEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATI 60
           + A++ +  G  KLM  Y  + CGYC EV VGP GH  + C +FKHQ RDG+H WQ+AT+
Sbjct: 323 IDAYQTVRKGVRKLMKKYTVKACGYCSEVHVGPWGHNAKLCGSFKHQWRDGKHGWQDATL 382

Query: 61  NDLVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEKNYAHSMREDVVV 120
           ++++PP YV+H+ D  +G P+   LKRYYG  PAVVE+  QAGA +   Y   MR D+V+
Sbjct: 383 DEVLPPNYVWHVRD-TNGPPIKAALKRYYGKAPAVVEVCVQAGARIPAEYKPLMRLDIVI 441

Query: 121 PEMDEEKLV 129
           P+ DE  ++
Sbjct: 442 PDTDEAGMI 450



 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 1/104 (0%)

Query: 3   AWEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATIND 62
           AW+ +  G S+L+       C  C EV V   GH + +C+      R   HAW    +ND
Sbjct: 153 AWKLLIKGLSQLLHVIPAYGCSECSEVHVAQTGHSILDCEGRTSSTRHSSHAWVRGNVND 212

Query: 63  LVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATV 106
           ++ P+  YH+ D   GK ++H+ +  Y  +PAVVEL  QAG  +
Sbjct: 213 ILVPIESYHLFD-PFGKRIMHDTRFEYDRIPAVVELCIQAGVDI 255


>Medtr2g088750.1 | APO RNA-binding protein | HC |
           chr2:37418951-37422309 | 20130731
          Length = 344

 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 67/115 (58%), Gaps = 1/115 (0%)

Query: 1   MKAWEKMCTGASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATI 60
           ++AW+ + +G  KL+  Y  + C YC EV VGP GH+ R C  FKH+   G H W +A +
Sbjct: 209 LEAWDVLRSGVEKLLLVYPVKVCKYCSEVHVGPSGHKARLCGVFKHESWKGAHFWTKANV 268

Query: 61  NDLVPPVYVYHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATVEKNYAHSMR 115
           ++LVPP  V+     Q    LV+E + +YG +PAV++L  +AG  V   Y   M+
Sbjct: 269 DNLVPPKIVWR-RRPQDPPVLVNEGRDFYGRVPAVLDLCTKAGVIVPAKYNVLMK 322



 Score = 70.1 bits (170), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 1/97 (1%)

Query: 10  GASKLMDTYAFQTCGYCPEVQVGPKGHRVRNCQAFKHQMRDGQHAWQEATINDLVPPVYV 69
           G S L++++    C +CPE+ +G +GH +  C+ +K + ++  H W +  +ND++ PV  
Sbjct: 75  GVSTLINSFPLMACKFCPEIYIGEQGHLIPTCRGYKRRAKNRVHEWVKGGLNDILVPVET 134

Query: 70  YHIGDQQSGKPLVHELKRYYGMLPAVVELFAQAGATV 106
           +H+ +      + H+ +  +  + AVVEL  QAGA V
Sbjct: 135 FHLNNMFQNV-IRHDQRFDFDRIAAVVELCWQAGADV 170