Miyakogusa Predicted Gene

Lj0g3v0204409.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0204409.2 Non Characterized Hit- tr|C5XJ90|C5XJ90_SORBI
Putative uncharacterized protein Sb03g046900
OS=Sorghu,51.65,5e-19,REGULATOR OF CHROMOSOME CONDENSATION
(RCC1),NULL; REGULATOR OF CHROMOSOME CONDENSATION,NULL;
seg,NUL,CUFF.13042.2
         (156 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g089900.1 | regulator of chromosome condensation (RCC1) fa...   228   2e-60
Medtr1g099220.1 | chromosome condensation regulator RCC1 repeat ...    65   2e-11
Medtr6g034795.1 | chromosome condensation regulator RCC1 repeat ...    62   2e-10

>Medtr5g089900.1 | regulator of chromosome condensation (RCC1)
           family protein | HC | chr5:39105074-39114126 | 20130731
          Length = 1117

 Score =  228 bits (581), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/156 (77%), Positives = 124/156 (79%)

Query: 1   MESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSLNPVFGSSKKFFSASVP 60
           MESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQ GALNISKS NPVFGSSKKFFSASVP
Sbjct: 783 MESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQRGALNISKSFNPVFGSSKKFFSASVP 842

Query: 61  GSRIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIVVDDAKRTNDSLSQEVIKLRQQVE 120
           GSRIV                             KIVVDDAK+TNDSLSQEVIKLR QVE
Sbjct: 843 GSRIVSRATSPISRRPSPPRSTTPTPTLGGLTTPKIVVDDAKKTNDSLSQEVIKLRSQVE 902

Query: 121 SLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKA 156
           SLTRKAQLQE+ELERT+KQLKDAIAIAGEETAKCKA
Sbjct: 903 SLTRKAQLQEIELERTSKQLKDAIAIAGEETAKCKA 938


>Medtr1g099220.1 | chromosome condensation regulator RCC1 repeat
           protein | HC | chr1:44778263-44766991 | 20130731
          Length = 1121

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 49/62 (79%)

Query: 95  KIVVDDAKRTNDSLSQEVIKLRQQVESLTRKAQLQEVELERTTKQLKDAIAIAGEETAKC 154
           K + D  K+TND L+QEV+KLR QVE+L ++ +LQE+EL+++ K+ ++A+ +A EE+AK 
Sbjct: 821 KSITDSLKKTNDLLNQEVLKLRSQVETLRQRCELQELELKKSAKKTQEAMVLATEESAKS 880

Query: 155 KA 156
           KA
Sbjct: 881 KA 882


>Medtr6g034795.1 | chromosome condensation regulator RCC1 repeat
           protein | HC | chr6:12109737-12119303 | 20130731
          Length = 1118

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 46/62 (74%)

Query: 95  KIVVDDAKRTNDSLSQEVIKLRQQVESLTRKAQLQEVELERTTKQLKDAIAIAGEETAKC 154
           K + D  K+TN+ L++EV KL  QVESL  K + QE+E++R+ K+ ++AIA+A EE+ KC
Sbjct: 817 KNIADSLKKTNELLNKEVQKLHAQVESLKNKCERQELEVQRSAKKTQEAIALATEESTKC 876

Query: 155 KA 156
           KA
Sbjct: 877 KA 878