Miyakogusa Predicted Gene

Lj0g3v0204409.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0204409.1 tr|D7KTY5|D7KTY5_ARALL Zinc finger protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_476853
,40.43,1e-18,REGULATOR OF CHROMOSOME CONDENSATION (RCC1),NULL;
REGULATOR OF CHROMOSOME CONDENSATION,NULL; seg,NUL,CUFF.13042.1
         (141 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g089900.1 | regulator of chromosome condensation (RCC1) fa...   197   2e-51
Medtr1g099220.1 | chromosome condensation regulator RCC1 repeat ...    51   3e-07

>Medtr5g089900.1 | regulator of chromosome condensation (RCC1)
           family protein | HC | chr5:39105074-39114126 | 20130731
          Length = 1117

 Score =  197 bits (502), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/141 (75%), Positives = 109/141 (77%)

Query: 1   MESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSLNPVFGSSKKFFSASVP 60
           MESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQ GALNISKS NPVFGSSKKFFSASVP
Sbjct: 783 MESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQRGALNISKSFNPVFGSSKKFFSASVP 842

Query: 61  GSRIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIVVDDAKRTNDSLSQEVIKLRQQVE 120
           GSRIV                             KIVVDDAK+TNDSLSQEVIKLR QVE
Sbjct: 843 GSRIVSRATSPISRRPSPPRSTTPTPTLGGLTTPKIVVDDAKKTNDSLSQEVIKLRSQVE 902

Query: 121 SLTRKAQLQEVELERTTKQLK 141
           SLTRKAQLQE+ELERT+KQLK
Sbjct: 903 SLTRKAQLQEIELERTSKQLK 923


>Medtr1g099220.1 | chromosome condensation regulator RCC1 repeat
           protein | HC | chr1:44778263-44766991 | 20130731
          Length = 1121

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/45 (51%), Positives = 36/45 (80%)

Query: 95  KIVVDDAKRTNDSLSQEVIKLRQQVESLTRKAQLQEVELERTTKQ 139
           K + D  K+TND L+QEV+KLR QVE+L ++ +LQE+EL+++ K+
Sbjct: 821 KSITDSLKKTNDLLNQEVLKLRSQVETLRQRCELQELELKKSAKK 865