Miyakogusa Predicted Gene

Lj0g3v0203889.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0203889.1 Non Characterized Hit- tr|A3BWF3|A3BWF3_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,59.42,5e-18,AF0625-like,NULL; seg,NULL;
tRNA_deacylase,D-aminoacyl-tRNA deacylase,CUFF.13022.1
         (115 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g066120.1 | D-aminoacyl-tRNA deacylase | HC | chr8:2747029...   186   3e-48
Medtr8g066120.2 | D-aminoacyl-tRNA deacylase | HC | chr8:2747031...    77   3e-15
Medtr8g066150.1 | hypothetical protein | HC | chr8:27480793-2747...    46   7e-06

>Medtr8g066120.1 | D-aminoacyl-tRNA deacylase | HC |
           chr8:27470291-27463868 | 20130731
          Length = 313

 Score =  186 bits (473), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 98/115 (85%), Gaps = 3/115 (2%)

Query: 1   MAQLVWEXXXXXXXTDIGNWGRENDKKKVLLGIGGGHYAPRHMDVVLKDDVWVGHLLSGY 60
           MAQLVWE       TD+GNW RENDKKKVLLGIGGGHY PRHM+VVLKD VWVGH+LSGY
Sbjct: 180 MAQLVWEGLGLGGGTDVGNWSRENDKKKVLLGIGGGHYVPRHMNVVLKDGVWVGHVLSGY 239

Query: 61  SLPMEDPNNAKGERNTAIGGTWKESIKAAYEASKSAFPGGEILAHLDHKSFKGWQ 115
           S+PMEDP   KGE N  IGGTWK+SIKAAYEA+KSAFPGGEI+AHLD KSFKGWQ
Sbjct: 240 SVPMEDP---KGETNVEIGGTWKQSIKAAYEATKSAFPGGEIIAHLDQKSFKGWQ 291


>Medtr8g066120.2 | D-aminoacyl-tRNA deacylase | HC |
           chr8:27470317-27463868 | 20130731
          Length = 271

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/47 (76%), Positives = 38/47 (80%)

Query: 1   MAQLVWEXXXXXXXTDIGNWGRENDKKKVLLGIGGGHYAPRHMDVVL 47
           MAQLVWE       TD+GNW RENDKKKVLLGIGGGHY PRHM+VVL
Sbjct: 225 MAQLVWEGLGLGGGTDVGNWSRENDKKKVLLGIGGGHYVPRHMNVVL 271


>Medtr8g066150.1 | hypothetical protein | HC |
          chr8:27480793-27477848 | 20130731
          Length = 76

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/82 (40%), Positives = 37/82 (45%), Gaps = 30/82 (36%)

Query: 2  AQLVWEXXXXXXXTDIGNWGRENDKKKVLLGIGGGHYAPRHMDVVLKDDVWVGHLLSGYS 61
          ++LVWE       TD+GNW R                         KD VW G L SGYS
Sbjct: 25 SKLVWEGLGGE--TDLGNWCR-------------------------KDGVWTGDLYSGYS 57

Query: 62 LPMEDPNNAKGERNTAIGGTWK 83
          LPMEDP   K E N  + GTWK
Sbjct: 58 LPMEDP---KEETNVDLEGTWK 76