Miyakogusa Predicted Gene

Lj0g3v0203669.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0203669.1 tr|A9RIG4|A9RIG4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_159272,31.87,0.22, ,CUFF.12989.1
         (175 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g077440.1 | hypothetical protein | HC | chr8:32861270-3285...   148   3e-36

>Medtr8g077440.1 | hypothetical protein | HC |
           chr8:32861270-32857864 | 20130731
          Length = 252

 Score =  148 bits (373), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 72/108 (66%), Positives = 83/108 (76%)

Query: 40  CKLPQWLFPLRNHFHSLTDTXXXXXXXXXXXXXXXASLRPPGPYAWVQYTPGEPILPNKP 99
            K PQ+L P  +HFHSLTDT               ASLRP GPYAWV++T GE ILPNKP
Sbjct: 117 SKTPQFLLPFLSHFHSLTDTRFPKRRPSDKPRRKRASLRPSGPYAWVEHTTGETILPNKP 176

Query: 100 NEGSVKRRNEKKRVRQHRAFVLAERKKRKAQLQEANRKKSIKKVERKM 147
           NEGS+KRRNEKKR+RQ RAF+LAE+KKRKAQ+QEA RKK++KKVERKM
Sbjct: 177 NEGSIKRRNEKKRMRQRRAFILAEKKKRKAQMQEAKRKKNVKKVERKM 224