Miyakogusa Predicted Gene

Lj0g3v0203569.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0203569.1 tr|A9SM14|A9SM14_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,44.25,3e-16,coiled-coil,NULL; seg,NULL,CUFF.12971.1
         (199 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g005300.1 | TPR domain protein | HC | chr4:185196-189299 |...   129   1e-30

>Medtr4g005300.1 | TPR domain protein | HC | chr4:185196-189299 |
           20130731
          Length = 388

 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/143 (55%), Positives = 94/143 (65%), Gaps = 13/143 (9%)

Query: 57  SVPSQA-PLLSSQVDRKLRNSSLDVDFEERLKEVRRSAIEQKKAEDKKEFGAIDYDEPIS 115
           S+P QA P L+SQV+      S D+DF++RL  ++RSA+EQKKA+DKK+FGAIDYD PIS
Sbjct: 60  SIPKQAAPRLTSQVN------SQDIDFQQRLNAIKRSALEQKKAQDKKQFGAIDYDSPIS 113

Query: 116 ---SDKKTIXXXXXXXXXXXXXXXXXXXXXXXXXPSGSVSPNEDS-AVVKSKLSEEDKAA 171
              SD KTI                         PSG  SPNED+ A+V  KLS+ DK A
Sbjct: 114 ISESDNKTISFATKVGIGVAVPVFALVFALGDFLPSG--SPNEDNIALVNDKLSDMDKTA 171

Query: 172 LESRLKEFEATLSNSPRDPTALE 194
           L+SRLKEFEATLSNSPRDPTALE
Sbjct: 172 LQSRLKEFEATLSNSPRDPTALE 194