Miyakogusa Predicted Gene

Lj0g3v0203469.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0203469.1 Non Characterized Hit- tr|C6T741|C6T741_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,42.75,4e-19,seg,NULL,CUFF.12976.1
         (197 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g037933.1 | transmembrane protein, putative | HC | chr8:14...    66   2e-11

>Medtr8g037933.1 | transmembrane protein, putative | HC |
          chr8:14084805-14083210 | 20130731
          Length = 179

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 41/63 (65%), Gaps = 6/63 (9%)

Query: 1  MRNPSTLQRAFVLFCLPLLLVATFGYATEV------SGNEVKTDGKVAQEEVAKTSQEGP 54
          MR  S LQR  + F +PLLL+ TF YAT V      SGN+V TDGK+A EE  KT+ EG 
Sbjct: 1  MRKASNLQRPLLAFWVPLLLLVTFCYATSVVARNDPSGNQVNTDGKLANEEATKTNLEGH 60

Query: 55 NEE 57
          NEE
Sbjct: 61 NEE 63