Miyakogusa Predicted Gene
- Lj0g3v0201619.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0201619.1 tr|B9SC90|B9SC90_RICCO DNA polymerase OS=Ricinus
communis GN=RCOM_1409950 PE=3 SV=1,93.33,0,no description,DNA
polymerase, palm domain; seg,NULL; coiled-coil,NULL; DNA POLYMERASE
ALPHA CATALYT,CUFF.12809.1
(166 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g017070.1 | DNA polymerase | HC | chr5:6204095-6191331 | 2... 274 3e-74
Medtr3g096525.2 | DNA polymerase delta catalytic subunit | HC | ... 52 2e-07
Medtr3g096525.1 | DNA polymerase delta catalytic subunit | HC | ... 52 2e-07
>Medtr5g017070.1 | DNA polymerase | HC | chr5:6204095-6191331 |
20130731
Length = 1526
Score = 274 bits (700), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 136/165 (82%), Positives = 143/165 (86%), Gaps = 1/165 (0%)
Query: 1 MYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDD 60
MYGCLGFSNSRFYAKP+AELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDD
Sbjct: 1002 MYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDD 1061
Query: 61 IVKAKAMAGKVIQEVNKKYKCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGSTPYEVIER 120
I KA +++ KVIQEVNKKY+CLEIDLDG QFKDG TPYEVIER
Sbjct: 1062 IAKATSISKKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFKDG-TPYEVIER 1120
Query: 121 KGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHSSLMKV 165
KGLDIVRRDWSLLAK+LGDFCLTQILSGGSCEDVVESIH+SLMKV
Sbjct: 1121 KGLDIVRRDWSLLAKDLGDFCLTQILSGGSCEDVVESIHNSLMKV 1165
>Medtr3g096525.2 | DNA polymerase delta catalytic subunit | HC |
chr3:44150897-44134651 | 20130731
Length = 1086
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 12/171 (7%)
Query: 1 MYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNL--------NLEVIYGDTDSI 52
+YG G S + I+ +T GR++++ T LV+ N EVIYGDTDS+
Sbjct: 687 VYGFTGASIGQLPCLEISSSVTSYGRQMIEHTKKLVEEKFTRLNGYDNNAEVIYGDTDSV 746
Query: 53 MIYSGLDDIVKAKAMAGKVIQEVNKKY-KCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDG 111
M+ G+ + A + + + ++ + K ++++ + +D
Sbjct: 747 MVQFGVSTVKDAMDLGKEAAEHISGTFTKPIKLEFEKVYCPYLLISKKRYAGLFWTKEDS 806
Query: 112 STPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHSSL 162
++ ++ KG++ VRRD LL K L + CL +IL + V+ + +++
Sbjct: 807 ---HDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIEKNIPAAVQHVKNAI 854
>Medtr3g096525.1 | DNA polymerase delta catalytic subunit | HC |
chr3:44150897-44133139 | 20130731
Length = 1086
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 12/171 (7%)
Query: 1 MYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNL--------NLEVIYGDTDSI 52
+YG G S + I+ +T GR++++ T LV+ N EVIYGDTDS+
Sbjct: 687 VYGFTGASIGQLPCLEISSSVTSYGRQMIEHTKKLVEEKFTRLNGYDNNAEVIYGDTDSV 746
Query: 53 MIYSGLDDIVKAKAMAGKVIQEVNKKY-KCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDG 111
M+ G+ + A + + + ++ + K ++++ + +D
Sbjct: 747 MVQFGVSTVKDAMDLGKEAAEHISGTFTKPIKLEFEKVYCPYLLISKKRYAGLFWTKEDS 806
Query: 112 STPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHSSL 162
++ ++ KG++ VRRD LL K L + CL +IL + V+ + +++
Sbjct: 807 ---HDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIEKNIPAAVQHVKNAI 854