Miyakogusa Predicted Gene

Lj0g3v0201579.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0201579.1 Non Characterized Hit- tr|C5YB39|C5YB39_SORBI
Putative uncharacterized protein Sb06g034000
OS=Sorghu,35.37,4e-18,seg,NULL,CUFF.12806.1
         (256 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108470.1 | DDB1- and CUL4-associated factor-like protein ...   280   7e-76

>Medtr3g108470.1 | DDB1- and CUL4-associated factor-like protein |
           HC | chr3:50133071-50123613 | 20130731
          Length = 1929

 Score =  280 bits (717), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 156/256 (60%), Positives = 180/256 (70%), Gaps = 7/256 (2%)

Query: 1   MLKTYSTALLAVCLTXXXXXXXXXXXLTSGLSAKLMRYLRLRVLGETSGSQIDTSHLTKS 60
           MLK YST LLAVCL            LTSGLSAKLMRYLRL VLGETSGSQ D+SHL+++
Sbjct: 177 MLKAYSTGLLAVCLVGGGQIVEDV--LTSGLSAKLMRYLRLCVLGETSGSQKDSSHLSEN 234

Query: 61  RHSSGDISVRGKDDGRSRFRQQLLESSHLDDDARVIDERSLDDLTLDRGQDRSISGQTCQ 120
           +HSSG+ SVRG+DD R RFRQ LLESSH+DD  R+I+E S DD   +RGQD   SGQ CQ
Sbjct: 235 KHSSGNTSVRGRDDSRGRFRQ-LLESSHVDD-TRMIEEGSFDDQAPERGQD---SGQACQ 289

Query: 121 EISWIDGEPPYWLNEGADICEVDSDGEERWHCRDICDGRIKYGEQXXXXXXXXXXXXXXX 180
           E  WIDGEPP  L+EGAD+CE DS+GEERW C+DI DGRIKYG+                
Sbjct: 290 EDPWIDGEPPDGLSEGADVCEADSEGEERWRCKDIRDGRIKYGDHEDNARDESSRRRTNR 349

Query: 181 XXXXXXXKGTVNDGTVESELVLSPPGSGSRLGQGHSVRDRSIVRNADVRRVPDSKKTLAR 240
                  KG VN+G V+SE VLS  GS SRLGQG SVRDRS +RN DV+RVPDSKKTL  
Sbjct: 350 GWGRSRGKGRVNEGPVDSEPVLSSAGSASRLGQGRSVRDRSSLRNGDVKRVPDSKKTLTS 409

Query: 241 NTSEDSVFERKDNDEC 256
           + SE  + ER+DND+C
Sbjct: 410 SISEALISEREDNDDC 425