Miyakogusa Predicted Gene

Lj0g3v0201469.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0201469.1 Non Characterized Hit- tr|I1JU86|I1JU86_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.39995 PE,44.76,5e-18,
,CUFF.12795.1
         (107 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g106220.1 | two-component response regulator ARR12-like pr...    67   3e-12
Medtr1g013180.1 | response regulator | LC | chr1:2902323-2906821...    57   4e-09

>Medtr3g106220.1 | two-component response regulator ARR12-like
           protein | HC | chr3:49062704-49057734 | 20130731
          Length = 645

 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 14/114 (12%)

Query: 1   MTPVPWNISCNAPFKGWDNHNQNSTYHSHVGGNSIGSMIPANGD---PVNSA------FN 51
            T  P  I+ N PF+GW++ NQ++TYHS+V   S+ S+ P NG    P  +A        
Sbjct: 512 FTNSPEYINGNLPFQGWEDRNQDATYHSNVTCGSMNSLAPVNGAVVPPGQTATESTLDTK 571

Query: 52  FCDPLQMNHDEIIELTEECSIKPHQLHVMDQQRYQNSSICNSLGSPEDLDSAMM 105
           F +P+QM H    ELTE  S +    +++ QQ++      N+LGS E L S+MM
Sbjct: 572 FFNPIQMKHAGFAELTECSSSRQSPANIISQQKF-----SNNLGSLEYLASSMM 620


>Medtr1g013180.1 | response regulator | LC | chr1:2902323-2906821 |
           20130731
          Length = 681

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 17/111 (15%)

Query: 4   VPWNISCNAPFKGWDN--HNQNSTYH-SHVGGNSIG-SMIPANGDPVNSAFNFCDP---L 56
           + +N S N PF+GWDN  +N + +YH SHV GNS+G SMI           N  +P   L
Sbjct: 560 IIFNSSNNVPFQGWDNNHNNHDGSYHPSHVVGNSVGPSMI--------HVLNAIEPEGNL 611

Query: 57  QMNH-DEIIELTEECSIKPHQLHVM-DQQRYQNSSICNSLGSPEDLDSAMM 105
             N+ D I EL E  S+KPH++++M +Q +  NS + N L S ED+   M+
Sbjct: 612 DNNYCDRIAELHEVPSLKPHEVYMMNNQMKAGNSHMSNELDSLEDVMRVMI 662