Miyakogusa Predicted Gene

Lj0g3v0201389.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0201389.1 Non Characterized Hit- tr|I3SKZ0|I3SKZ0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.76,0,FIBRILLARIN,Fibrillarin; FIBRILLARIN,Fibrillarin,
conserved site; RRNA 2-O-METHYLTRANSFERASE FIBRILL,CUFF.12805.1
         (204 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g114000.1 | mediator of RNA polymerase II transcription su...   305   3e-83
Medtr6g047580.2 | mediator of RNA polymerase II transcription su...   303   9e-83
Medtr6g047580.1 | mediator of RNA polymerase II transcription su...   302   1e-82
Medtr6g047580.3 | mediator of RNA polymerase II transcription su...   302   2e-82
Medtr6g047580.4 | mediator of RNA polymerase II transcription su...   301   2e-82
Medtr8g030490.1 | fibrillarin protein | LC | chr8:11292197-11292...    52   5e-07

>Medtr1g114000.1 | mediator of RNA polymerase II transcription
           subunit 36a | HC | chr1:51431328-51427705 | 20130731
          Length = 313

 Score =  305 bits (780), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 149/157 (94%), Positives = 154/157 (98%), Gaps = 1/157 (0%)

Query: 47  SRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVWNPFR 106
           S+V+VEPHRHEGIFIAKG KEDALVTKNLVPGEAVYNEKRVTVQ EDGTK EYR+WNPFR
Sbjct: 73  SKVIVEPHRHEGIFIAKG-KEDALVTKNLVPGEAVYNEKRVTVQNEDGTKTEYRIWNPFR 131

Query: 107 SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 166
           SKLAAA+LGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV
Sbjct: 132 SKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 191

Query: 167 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVA 203
           NMAKKRTNVIPIIEDARHPAKYRMLVGMVDV+FSDVA
Sbjct: 192 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 228


>Medtr6g047580.2 | mediator of RNA polymerase II transcription
           subunit 36a | HC | chr6:17127276-17131212 | 20130731
          Length = 277

 Score =  303 bits (775), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 149/157 (94%), Positives = 154/157 (98%), Gaps = 1/157 (0%)

Query: 47  SRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVWNPFR 106
           S+VVVEPHRHEGIFIAKG KEDALVTKNLVPGEAVYNEKRV+VQ EDGTK EYR+WNPFR
Sbjct: 37  SKVVVEPHRHEGIFIAKG-KEDALVTKNLVPGEAVYNEKRVSVQNEDGTKVEYRIWNPFR 95

Query: 107 SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 166
           SKLAAA+LGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV
Sbjct: 96  SKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 155

Query: 167 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVA 203
           NMAKKRTNVIPIIEDARHPAKYRMLVGMVDV+FSDVA
Sbjct: 156 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 192


>Medtr6g047580.1 | mediator of RNA polymerase II transcription
           subunit 36a | HC | chr6:17127229-17131313 | 20130731
          Length = 309

 Score =  302 bits (774), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 149/157 (94%), Positives = 154/157 (98%), Gaps = 1/157 (0%)

Query: 47  SRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVWNPFR 106
           S+VVVEPHRHEGIFIAKG KEDALVTKNLVPGEAVYNEKRV+VQ EDGTK EYR+WNPFR
Sbjct: 69  SKVVVEPHRHEGIFIAKG-KEDALVTKNLVPGEAVYNEKRVSVQNEDGTKVEYRIWNPFR 127

Query: 107 SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 166
           SKLAAA+LGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV
Sbjct: 128 SKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 187

Query: 167 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVA 203
           NMAKKRTNVIPIIEDARHPAKYRMLVGMVDV+FSDVA
Sbjct: 188 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 224


>Medtr6g047580.3 | mediator of RNA polymerase II transcription
           subunit 36a | HC | chr6:17127276-17131212 | 20130731
          Length = 261

 Score =  302 bits (773), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 149/157 (94%), Positives = 154/157 (98%), Gaps = 1/157 (0%)

Query: 47  SRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVWNPFR 106
           S+VVVEPHRHEGIFIAKG KEDALVTKNLVPGEAVYNEKRV+VQ EDGTK EYR+WNPFR
Sbjct: 69  SKVVVEPHRHEGIFIAKG-KEDALVTKNLVPGEAVYNEKRVSVQNEDGTKVEYRIWNPFR 127

Query: 107 SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 166
           SKLAAA+LGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV
Sbjct: 128 SKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 187

Query: 167 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVA 203
           NMAKKRTNVIPIIEDARHPAKYRMLVGMVDV+FSDVA
Sbjct: 188 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 224


>Medtr6g047580.4 | mediator of RNA polymerase II transcription
           subunit 36a | HC | chr6:17127238-17131313 | 20130731
          Length = 262

 Score =  301 bits (772), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 149/157 (94%), Positives = 154/157 (98%), Gaps = 1/157 (0%)

Query: 47  SRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVWNPFR 106
           S+VVVEPHRHEGIFIAKG KEDALVTKNLVPGEAVYNEKRV+VQ EDGTK EYR+WNPFR
Sbjct: 69  SKVVVEPHRHEGIFIAKG-KEDALVTKNLVPGEAVYNEKRVSVQNEDGTKVEYRIWNPFR 127

Query: 107 SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 166
           SKLAAA+LGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV
Sbjct: 128 SKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 187

Query: 167 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVA 203
           NMAKKRTNVIPIIEDARHPAKYRMLVGMVDV+FSDVA
Sbjct: 188 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVA 224


>Medtr8g030490.1 | fibrillarin protein | LC |
          chr8:11292197-11292030 | 20130731
          Length = 55

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/38 (60%), Positives = 29/38 (76%)

Query: 47 SRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNE 84
          S+ V+ PHRHEG+FI K    DAL+TKNLVPGE+ + E
Sbjct: 5  SKGVIIPHRHEGVFIFKTSNSDALLTKNLVPGESFHIE 42