Miyakogusa Predicted Gene

Lj0g3v0201119.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0201119.2 tr|C7FD52|C7FD52_ARALP At4g14180-like protein
(Fragment) OS=Arabidopsis lyrata subsp. petraea PE=4
S,52,0.000000000000003,seg,NULL,CUFF.12769.2
         (165 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g084640.1 | recombination initiation defect protein, putat...   263   5e-71

>Medtr3g084640.1 | recombination initiation defect protein, putative |
            HC | chr3:38230275-38223014 | 20130731
          Length = 1276

 Score =  263 bits (673), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 143/165 (86%)

Query: 1    MSIRSILEGLVFYSDLRVATNCALCLSMLMRWENHAEETKLLGHSSWCRLVIEEMTVSLA 60
            MSIRSILEG+VFY+DLRVATNCALCLS+L+RWEN A+ET+ LG SSWCRL++EEMTVSLA
Sbjct: 1054 MSIRSILEGMVFYNDLRVATNCALCLSILLRWENLAKETEQLGKSSWCRLIMEEMTVSLA 1113

Query: 61   APSLASQSFMESQRPAVXXXXXXXXXXXXPQWVRYVFNNSCISGILENIAATNLSSEILV 120
            AP+LASQSFM +Q PAV            PQW+R VFNNSCISGILEN+AA NLS EILV
Sbjct: 1114 APALASQSFMNNQTPAVLVASALLKLHKIPQWMRSVFNNSCISGILENLAANNLSPEILV 1173

Query: 121  LFRELLKSDFLSTEQITTINQILQECRKRMYTNNAQEGLPKEPVK 165
            LFRELLKSDFLSTEQI TI+Q+LQECRK+MYTNNAQ+GLP EP+K
Sbjct: 1174 LFRELLKSDFLSTEQIATISQMLQECRKQMYTNNAQDGLPSEPIK 1218