Miyakogusa Predicted Gene

Lj0g3v0201119.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0201119.1 Non Characterized Hit- tr|G7JAU9|G7JAU9_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,78.96,0,seg,NULL; ARM repeat,Armadillo-type
fold,CUFF.12769.1
         (1242 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g084640.1 | recombination initiation defect protein, putat...  1853   0.0  

>Medtr3g084640.1 | recombination initiation defect protein, putative |
            HC | chr3:38230275-38223014 | 20130731
          Length = 1276

 Score = 1853 bits (4801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 925/1237 (74%), Positives = 1031/1237 (83%), Gaps = 20/1237 (1%)

Query: 6    DSQSMDVDDXXXXXXXXXXXXXXXXXXXLNLPTHQGGSICLVCFSNLISNPHSPTIHVSY 65
            DS+S+D++D                   LNL T+QGG+ICLVCFSNLISNP SPTIHVSY
Sbjct: 2    DSESIDIEDEGDSRWCCSQGHRSS----LNLQTNQGGTICLVCFSNLISNPSSPTIHVSY 57

Query: 66   AXXXXXXXXXXXXXXXXILTFHPHFLLSPLITALSSFDDDPVAEQLIHLVLALAVSPQQP 125
            A                I+TFHPHFL+SPL+ ALSSFDD+P+AEQL+HL+L L+ S   P
Sbjct: 58   ALSQLSRSLSIPQFLHSIVTFHPHFLVSPLVAALSSFDDEPIAEQLVHLILNLSAS-SDP 116

Query: 126  SIRRQFVARVSDRISSGALGWSPRQLHMLHCLGALLNCEKDDDLHVHIKDIYSLISVLVT 185
            S+ R+FVARVSDR+SSGALGWS RQLH LHCLG LLNCEK+DDLHVHIKD+YSLISVLVT
Sbjct: 117  SVCREFVARVSDRVSSGALGWSSRQLHSLHCLGVLLNCEKEDDLHVHIKDVYSLISVLVT 176

Query: 186  GLQLPSEEIRGEVLFVLYKLYFLQSKSAEGDGSDILIRFCPKLLYLLTNVLMKTQNDDVR 245
            GLQLPSEEIRGEVLFVLYKL+ L S S EGDGSD+LI FCPKLLYLL +VL+KTQNDDVR
Sbjct: 177  GLQLPSEEIRGEVLFVLYKLFALHSTSDEGDGSDMLIPFCPKLLYLLGDVLLKTQNDDVR 236

Query: 246  LNCIXXXXXXXXXXXXXEECACDSSYMSSSGGVNYKESEDGVNGSSLVNLFAEAIKGPML 305
            LNCI             EE A D+  MS SG VN+KE+ED   G+SLVNLFAEAIKGP+L
Sbjct: 237  LNCIALLTMLAQRQLLREEPAYDTGNMSLSGEVNFKETEDVPEGASLVNLFAEAIKGPLL 296

Query: 306  SSDSQVQISTLDLLFHYLSSVGTSGNQIQVLVEENIADYLFEILRLSEYKDPAVKMCLQL 365
            SS SQVQI  LDLLFHYLSSVGTSGNQIQVLVEENIADYLFEILRLSE KDPAVKMCLQ+
Sbjct: 297  SSVSQVQIGALDLLFHYLSSVGTSGNQIQVLVEENIADYLFEILRLSENKDPAVKMCLQV 356

Query: 366  LDLLSTAEEVFKPRLVVGFSTLIPVLRYVAEVPFHPVQYETLKLIFYCISEFPGAVSTSQ 425
            LDLLS +EE F+PRLVVGFSTL+PVLRYV EVPFHPVQYETLKLI+ CISE PGAVSTSQ
Sbjct: 357  LDLLSNSEEAFRPRLVVGFSTLVPVLRYVTEVPFHPVQYETLKLIYECISECPGAVSTSQ 416

Query: 426  LEELVLILTRMFRKHSDGEMGIIPETFAMACSVFVALIRSPSCKEALDLSKSIEEAIKHA 485
            +EELVL+L +M  KHSDGEMG+IPETF MACSVFVAL+RSPSC  ALDLSKSIEEA+K A
Sbjct: 417  MEELVLVLIKMLTKHSDGEMGMIPETFIMACSVFVALMRSPSCNGALDLSKSIEEAVKQA 476

Query: 486  ISACLYVSERNINQILQCLYLLKEAYAYSHDGNSTNSSILELRCSILDICRTRLLPWLLS 545
            I ACLYVSERNINQILQC YLLKEAYAYSHD NST+ S LELR  ILDICRT LLPWL +
Sbjct: 477  ILACLYVSERNINQILQCFYLLKEAYAYSHDENSTHISKLELRSGILDICRTHLLPWLAT 536

Query: 546  DINEMQEEIVLGLLEIFHSILLLHPSIDSTEFAETLISSCWFSFSYGCLGLFTGDRMKHR 605
             I + ++                +    S EFAETL+S CWFSFSYGCLGLF GDRMKHR
Sbjct: 537  GIMKWKKN---------------YSWYYSREFAETLMSFCWFSFSYGCLGLFAGDRMKHR 581

Query: 606  IYXXXXXXXXXXXGIDSGQPVRDAALHLPSDPVDLLFLLRQRSTNRSDFPSCQSAALLIM 665
            IY           G D+GQP+RDAALHLPSDPVDLLF+L QRST+  DF SCQSAALLIM
Sbjct: 582  IYLLLGSLIDSLIGNDTGQPIRDAALHLPSDPVDLLFMLGQRSTDSLDFSSCQSAALLIM 641

Query: 666  YTSSLYDERLADGKLVLASLEQYILLNCGAFHNWATDILTVTRLVNLYSLLRGLGNMVYQ 725
            YTSSLYDERLAD  + LASLEQY+LLN    HNW TD LTVTRLVNLYSLLRGLGNM YQ
Sbjct: 642  YTSSLYDERLADDNMALASLEQYVLLNSSDSHNWTTDSLTVTRLVNLYSLLRGLGNMNYQ 701

Query: 726  VQYSREAEEIIFQLINNGEWDLLSARTHIVSLKWLFRQENIVKSLCHQILKFCQSYNLEE 785
            + YSREAEEIIFQLINNGEWDLLSAR H VSLKWLF+QENI+ SLCHQILKFC++ NLE 
Sbjct: 702  IHYSREAEEIIFQLINNGEWDLLSARIHTVSLKWLFQQENIINSLCHQILKFCRNNNLEG 761

Query: 786  ADIIIGNNSQTINVQTLAELVSTGENYGARLFVCLLAQLFEEEGQEHEMISVLNLMATMV 845
             D+IIGN++QT+NVQTLAELVS+ +NYGARLF+CLLAQL EEEGQEH++ISVLNLMATM+
Sbjct: 762  DDMIIGNSNQTVNVQTLAELVSSEDNYGARLFICLLAQLAEEEGQEHDIISVLNLMATMI 821

Query: 846  HVCPAVSDQLSLHGIAATIKTWCFSTTTFMSILILAFNILSSAHPQTLSADQSWVAVTMK 905
            H+CPA SDQLSLHGI  TI+T CFST TFMSIL+L FN LSS HP+TLS DQSWVAVTM+
Sbjct: 822  HICPAASDQLSLHGIGTTIRTCCFSTATFMSILVLVFNTLSSVHPKTLSTDQSWVAVTME 881

Query: 906  MIEYSIPATMADILSHESLFVIGILSLILHLSTNEALEDPSKSILFNTCIISAVNTVVCA 965
            M+EYSIP+  ADILS ESLFVIGILSLILHLSTN+ L++ SK+ILFNTCIIS VNT+VCA
Sbjct: 882  MMEYSIPSKEADILSQESLFVIGILSLILHLSTNKVLKETSKTILFNTCIISVVNTIVCA 941

Query: 966  ASSKGAALSDHDEGTSTGETLIFVLLLNYFAVKSLHAVIPGFVDWQSFLVSTNPSEPLAF 1025
            ASSKG AL DHDEGTSTGETLIFVLLL+ FAVKSLHA++PGFVDWQ FLVS N SEPLAF
Sbjct: 942  ASSKGPALVDHDEGTSTGETLIFVLLLHIFAVKSLHAILPGFVDWQKFLVSMNSSEPLAF 1001

Query: 1026 IGIRCHELCRLLHFGSSVIKIIASYSLLELFNRISDQINSKHEELRCSIGHLMSIRSILE 1085
            IGIRCH+LCRLLHFGS V+KIIASYSLLELFNRISDQIN+K EEL+C++G+LMSIRSILE
Sbjct: 1002 IGIRCHDLCRLLHFGSPVVKIIASYSLLELFNRISDQINTKQEELKCTVGYLMSIRSILE 1061

Query: 1086 GLVFYSDLRVATNCALCLSMLMRWENHAEETKLLGHSSWCRLVIEEMTVSLAAPSLASQS 1145
            G+VFY+DLRVATNCALCLS+L+RWEN A+ET+ LG SSWCRL++EEMTVSLAAP+LASQS
Sbjct: 1062 GMVFYNDLRVATNCALCLSILLRWENLAKETEQLGKSSWCRLIMEEMTVSLAAPALASQS 1121

Query: 1146 FMESQRPAVXXXXXXXXXXXXPQWVRYVFNNSCISGILENIAATNLSSEILVLFRELLKS 1205
            FM +Q PAV            PQW+R VFNNSCISGILEN+AA NLS EILVLFRELLKS
Sbjct: 1122 FMNNQTPAVLVASALLKLHKIPQWMRSVFNNSCISGILENLAANNLSPEILVLFRELLKS 1181

Query: 1206 DFLSTEQITTINQILQECRKRMYTNNAQEGLPKEPVK 1242
            DFLSTEQI TI+Q+LQECRK+MYTNNAQ+GLP EP+K
Sbjct: 1182 DFLSTEQIATISQMLQECRKQMYTNNAQDGLPSEPIK 1218