Miyakogusa Predicted Gene

Lj0g3v0200439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0200439.1 tr|Q9FLE0|Q9FLE0_ARATH GTP-binding protein-like
OS=Arabidopsis thaliana GN=At5g39960 PE=4 SV=1,80,5e-19,MMR_HSR1,GTP
binding domain; no description,NULL; P-loop containing nucleoside
triphosphate hydrolas,CUFF.12715.1
         (121 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g134500.1 | ribosome-associated GTPase EngA | HC | chr4:56...   132   8e-32
Medtr4g065030.1 | GTPase Der protein | HC | chr4:24379001-243866...    56   7e-09
Medtr4g065030.3 | GTPase Der protein | HC | chr4:24379001-243866...    56   7e-09
Medtr4g065030.2 | GTPase Der protein | HC | chr4:24379001-243866...    56   7e-09

>Medtr4g134500.1 | ribosome-associated GTPase EngA | HC |
           chr4:56328156-56322710 | 20130731
          Length = 545

 Score =  132 bits (332), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 80/97 (82%), Gaps = 5/97 (5%)

Query: 20  SPRNIFF--NTSTTATRGFSSSKYKPLDLDFTQLPISRLPTIIIIGRPNVGKSALFNRLI 77
           S  NIF    T  T +RGF + K    +LDFT++ ISRLPT+II+GRPNVGKSALFNRLI
Sbjct: 2   SNSNIFLFRWTRRTFSRGFCTKKK---NLDFTKVEISRLPTVIILGRPNVGKSALFNRLI 58

Query: 78  QRREALVYNTPEDHVTRDIREGVAKLGNLRFRVLDPS 114
           +RREALVYNTP+DHVTRDIREGVAKLG+LRFRVLD +
Sbjct: 59  RRREALVYNTPDDHVTRDIREGVAKLGHLRFRVLDSA 95


>Medtr4g065030.1 | GTPase Der protein | HC | chr4:24379001-24386634
           | 20130731
          Length = 646

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 51  LPISRLPTIIIIGRPNVGKSALFNRLIQRREALVYNTPEDHVTRDIREGVAKLGNLRFRV 110
           +P + LP I I+GRPNVGKSALFNRL+   +A+V + P   VTRD   G +  G+  F V
Sbjct: 133 IPDNLLPRIAIVGRPNVGKSALFNRLVGGNKAIVVDEP--GVTRDRLYGRSYWGDNEFMV 190

Query: 111 LD 112
           +D
Sbjct: 191 VD 192


>Medtr4g065030.3 | GTPase Der protein | HC | chr4:24379001-24386603
           | 20130731
          Length = 646

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 51  LPISRLPTIIIIGRPNVGKSALFNRLIQRREALVYNTPEDHVTRDIREGVAKLGNLRFRV 110
           +P + LP I I+GRPNVGKSALFNRL+   +A+V + P   VTRD   G +  G+  F V
Sbjct: 133 IPDNLLPRIAIVGRPNVGKSALFNRLVGGNKAIVVDEP--GVTRDRLYGRSYWGDNEFMV 190

Query: 111 LD 112
           +D
Sbjct: 191 VD 192


>Medtr4g065030.2 | GTPase Der protein | HC | chr4:24379001-24386634
           | 20130731
          Length = 646

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 2/62 (3%)

Query: 51  LPISRLPTIIIIGRPNVGKSALFNRLIQRREALVYNTPEDHVTRDIREGVAKLGNLRFRV 110
           +P + LP I I+GRPNVGKSALFNRL+   +A+V + P   VTRD   G +  G+  F V
Sbjct: 133 IPDNLLPRIAIVGRPNVGKSALFNRLVGGNKAIVVDEP--GVTRDRLYGRSYWGDNEFMV 190

Query: 111 LD 112
           +D
Sbjct: 191 VD 192