Miyakogusa Predicted Gene

Lj0g3v0199939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0199939.1 Non Characterized Hit- tr|I1KAP0|I1KAP0_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,29.45,0.0000002,SUBFAMILY NOT NAMED,NULL; TOPOISOMERASE-RELATED
PROTEIN,NULL; seg,NULL,CUFF.12694.1
         (161 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g027790.1 | nucleotidyltransferase | HC | chr8:10138672-10...   204   4e-53
Medtr8g027790.2 | nucleotidyltransferase | HC | chr8:10139519-10...   197   3e-51

>Medtr8g027790.1 | nucleotidyltransferase | HC |
            chr8:10138672-10130996 | 20130731
          Length = 1343

 Score =  204 bits (518), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 101/164 (61%), Positives = 110/164 (67%), Gaps = 3/164 (1%)

Query: 1    MTRAAIESSEHKADILNSDFVSHWQNLQFGRFCQTSRHXXXXXXXXXXXXXXAYLQGRYP 60
            M RA IESS+HK DIL+SDF SHW NLQFGR CQ                   YLQGRYP
Sbjct: 1016 MRRAGIESSDHKPDILHSDFASHWSNLQFGRLCQGPSQPPSMMHPSPAMVPPVYLQGRYP 1075

Query: 61   LDGPGRP---DMNLFAQLMSYGPRVVPAAPLQSVSTRPTNMYQRFADDMPRYRSGTGTYL 117
             DGPGRP   +MNL  QLM+YGPR+VP  PLQSVS RPT++YQ F +DMPRYRSGTGTYL
Sbjct: 1076 WDGPGRPPSANMNLATQLMNYGPRLVPVPPLQSVSNRPTHIYQHFVEDMPRYRSGTGTYL 1135

Query: 118  PNPKASARDRHPTXXXXXXXXXXXXXHHSDREGNWNMNPKLRAT 161
            PNPK S RDRH T             HH DREGNWNMN KLR+T
Sbjct: 1136 PNPKVSVRDRHSTNTRRGNYNYDRSDHHGDREGNWNMNSKLRST 1179


>Medtr8g027790.2 | nucleotidyltransferase | HC |
            chr8:10139519-10130668 | 20130731
          Length = 1342

 Score =  197 bits (501), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/164 (60%), Positives = 109/164 (66%), Gaps = 4/164 (2%)

Query: 1    MTRAAIESSEHKADILNSDFVSHWQNLQFGRFCQTSRHXXXXXXXXXXXXXXAYLQGRYP 60
            M RA IESS+HK DIL+SDF SHW NLQFGR CQ                   YLQGRYP
Sbjct: 1016 MRRAGIESSDHKPDILHSDFASHWSNLQFGRLCQGPSQPPSMMHPSPAMVPPVYLQGRYP 1075

Query: 61   LDGPGRP---DMNLFAQLMSYGPRVVPAAPLQSVSTRPTNMYQRFADDMPRYRSGTGTYL 117
             DGPGRP   +MNL  QLM+YGPR+VP  PLQSVS RPT++YQ F +DMPRYRSGTGTYL
Sbjct: 1076 WDGPGRPPSANMNLATQLMNYGPRLVPVPPLQSVSNRPTHIYQHFVEDMPRYRSGTGTYL 1135

Query: 118  PNPKASARDRHPTXXXXXXXXXXXXXHHSDREGNWNMNPKLRAT 161
            PNP  S RDRH T             HH DREGNWNMN KLR+T
Sbjct: 1136 PNP-VSVRDRHSTNTRRGNYNYDRSDHHGDREGNWNMNSKLRST 1178