Miyakogusa Predicted Gene

Lj0g3v0199689.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0199689.1 Non Characterized Hit- tr|B4FQZ1|B4FQZ1_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,26.84,0.00000000003,zf-met,NULL; U1-like zinc finger,Zinc finger,
U1-type; zinc finger,Zinc finger, C2H2-like; seg,NULL;,CUFF.12654.1
         (517 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g023750.1 | C2H2 type zf-met: zinc-finger protein | HC | c...    60   8e-09

>Medtr3g023750.1 | C2H2 type zf-met: zinc-finger protein | HC |
           chr3:7230508-7224689 | 20130731
          Length = 393

 Score = 59.7 bits (143), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 23/199 (11%)

Query: 174 IPNSAEVPAASAQPLSRKMYCEVCKAECNSPEIMEQHKNGKRHKKNMKIHEELQRRNNLN 233
           +PN  +V  A        + CEVCK + NS +  + H  GK+HKKN++I       ++ N
Sbjct: 115 LPNQTKVTIA--------LRCEVCKVDVNSKDSYDSHIAGKKHKKNLQIQTNPTIASHAN 166

Query: 234 GQQSGQIPTSQVNLADHPQKVQNSEKKECPTENMGSEITADYDKNEIKLQNNVGETSEVP 293
            Q        Q  +   P   Q+  KK+  +  + S         +  +++  G      
Sbjct: 167 VQTDTSSIQGQALIG--PVAKQSEPKKQVDSATVCSTCNVLCTSQDAYIKHLAGR----- 219

Query: 294 AEGPEGNTTDNSALGDRGLKRKMRG-GKVRRNAKKTTAQLSEAEQPTTFICELCNAKCES 352
               +     N+ +G    + K  G G  ++ AKK     S         CE+C   C S
Sbjct: 220 KHAAQVALMSNNGIGPSIAEFKRNGVGPFQKAAKKIKVAQS-------VWCEVCKINCNS 272

Query: 353 PAVYNSHMAGKKHLANLKR 371
             +Y +H+AGKKHL  L++
Sbjct: 273 RDIYITHLAGKKHLKTLEK 291