Miyakogusa Predicted Gene

Lj0g3v0199409.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0199409.1 Non Characterized Hit- tr|I1KIC6|I1KIC6_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,27.82,0.0000000000002,no description,NULL;
RNI-like,NULL,CUFF.12636.1
         (383 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g053025.1 | F-box/RNI/FBD-like domain protein | LC | chr1:...    50   5e-06

>Medtr1g053025.1 | F-box/RNI/FBD-like domain protein | LC |
           chr1:22054473-22057503 | 20130731
          Length = 389

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 29/183 (15%)

Query: 81  RNYEHVFMSQHRNHGPVFFVPANLFNCATIVTLKLEGPFIL--HVPSRIQLSSLKSLHL- 137
           R  E++ +  H N+ P F  P +   C T+VTLKL G  ++   +PS I L SL++LHL 
Sbjct: 112 RRLEYLCLCLHVNNLPKF--PISTLGCKTLVTLKLRGFHLVGFSLPS-IGLPSLRTLHLK 168

Query: 138 NVRKCEPSCKKF---LSGSPALQFFYLNEINNLRLKEFRAERNSQGNLIVSNNLRNLHEY 194
           N+       + F   L+G P L+        NLR+ +       + +L +    + +  +
Sbjct: 169 NIEFT--GIQGFMLVLAGCPMLE--------NLRVSDIYFHEEEEDSLTI----QEVKSF 214

Query: 195 DYVYMTLHKVDDHSHVVSMLNAMQNVEFLC---DWKE--MMEVNHHCSIDSPQFPNLVHL 249
            +  +T  KV         + A+   E+LC    W E  + EVN   S +SP F NL HL
Sbjct: 215 SFPKLTRAKVTRFWSSYFPMKALSKSEYLCIDAYWFEDFIYEVNQPYS-NSPIFHNLTHL 273

Query: 250 ELR 252
           +LR
Sbjct: 274 QLR 276