Miyakogusa Predicted Gene

Lj0g3v0199269.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0199269.1 Non Characterized Hit- tr|C6T2R6|C6T2R6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.31767
PE,86.49,0,seg,NULL; SAP18,Sin3 associated polypeptide
p18,CUFF.12625.1
         (152 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g033340.1 | histone deacetylase complex subunit SAP18 | HC...   232   1e-61

>Medtr8g033340.1 | histone deacetylase complex subunit SAP18 | HC |
           chr8:12850574-12854427 | 20130731
          Length = 151

 Score =  232 bits (591), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 111/119 (93%), Positives = 117/119 (98%)

Query: 33  VDREKTCPLLLRVFTKIGGHHTMEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPA 92
           VDREKTCPLLLRVFTKIG HH+M+DF+VRGKEPKDEVQIYTWKDATLRELTDLVKEVAPA
Sbjct: 33  VDREKTCPLLLRVFTKIGSHHSMDDFSVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPA 92

Query: 93  ARRRKAKLSFAFVFPDKNGRFKVQEVGKTLSFGTGRLDDGKALADLGFEIGDYLDVSII 151
           ARRR AKLSFAFVFPDKNGRFKVQEVGKTLS+GTGRLDDGKALADLGFEIGDYLDV+I+
Sbjct: 93  ARRRNAKLSFAFVFPDKNGRFKVQEVGKTLSYGTGRLDDGKALADLGFEIGDYLDVAIL 151