Miyakogusa Predicted Gene

Lj0g3v0199009.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0199009.1 Non Characterized Hit- tr|I3SG74|I3SG74_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,94.47,0,RIBOSOMAL_S7,Ribosomal protein S7, conserved site;
Ribosomal_S7,Ribosomal protein S7 domain; Ribosom,CUFF.12609.1
         (207 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g054310.1 | 40S ribosomal protein S5-2 | HC | chr1:2338111...   381   e-106
Medtr7g107380.1 | 40S ribosomal protein S5-2 | HC | chr7:4380805...   363   e-101
Medtr0515s0010.1 | ribosomal protein S7p/S5e | HC | scaffold0515...   141   4e-34
Medtr0306s0010.1 | ribosomal protein S7p/S5e | HC | scaffold0306...   141   4e-34
Medtr3g035660.1 | NAD(P)H-quinone oxidoreductase subunit 2 | HC ...    67   1e-11
Medtr0002s0300.1 | 30S ribosomal protein S7 | HC | scaffold0002:...    50   1e-06

>Medtr1g054310.1 | 40S ribosomal protein S5-2 | HC |
           chr1:23381114-23384634 | 20130731
          Length = 239

 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/208 (89%), Positives = 197/208 (94%), Gaps = 2/208 (0%)

Query: 1   MSDVIAEP-AIVADPSQIDVKLFNRWSYDDVQVNDISLADYIGVVASKHATYVPHTAGSY 59
           M+DVI EP A+V+DP+ I+VKLFNRWS+DDVQ+ D+SL DYIG   SKHATYVPHTAG Y
Sbjct: 33  MADVIEEPVAVVSDPNLIEVKLFNRWSFDDVQITDLSLGDYIGA-RSKHATYVPHTAGRY 91

Query: 60  SVKRFRKAQCPLIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAV 119
           S KRFRKAQCP++ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTD NPIQVIVDAV
Sbjct: 92  SKKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAV 151

Query: 120 INSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADE 179
           +NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADE
Sbjct: 152 VNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADE 211

Query: 180 LINAAKGSSNSYAIKKKDEIERVAKANR 207
           LINAAKGSSNSYAIKKKDEIERVAKANR
Sbjct: 212 LINAAKGSSNSYAIKKKDEIERVAKANR 239


>Medtr7g107380.1 | 40S ribosomal protein S5-2 | HC |
           chr7:43808050-43812723 | 20130731
          Length = 206

 Score =  363 bits (932), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 175/195 (89%), Positives = 185/195 (94%), Gaps = 1/195 (0%)

Query: 13  DPSQIDVKLFNRWSYDDVQVNDISLADYIGVVASKHATYVPHTAGSYSVKRFRKAQCPLI 72
           DP+  +VKLFN+WS+DD+Q+ D+SL DYIG   SKHATYVPHTAG YS KRFRKAQCP++
Sbjct: 13  DPNLNEVKLFNQWSFDDLQITDLSLGDYIGA-RSKHATYVPHTAGRYSKKRFRKAQCPIV 71

Query: 73  ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIG 132
           ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTD NPIQVIVDAV+NSGPREDATRIG
Sbjct: 72  ERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIG 131

Query: 133 SAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYA 192
           SAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYA
Sbjct: 132 SAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYA 191

Query: 193 IKKKDEIERVAKANR 207
           IKKKDEIERVAKANR
Sbjct: 192 IKKKDEIERVAKANR 206


>Medtr0515s0010.1 | ribosomal protein S7p/S5e | HC |
           scaffold0515:3884-3334 | 20130731
          Length = 86

 Score =  141 bits (356), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 64/76 (84%), Positives = 70/76 (92%)

Query: 46  SKHATYVPHTAGSYSVKRFRKAQCPLIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHL 105
           SKHATY+PHT G YS K+FRKAQCP++ERLTNSLMMHGRNNGKKL  VRIIKHAMEIIHL
Sbjct: 5   SKHATYIPHTVGRYSKKQFRKAQCPIVERLTNSLMMHGRNNGKKLRVVRIIKHAMEIIHL 64

Query: 106 LTDLNPIQVIVDAVIN 121
           LTD NPIQVI+DAV+N
Sbjct: 65  LTDHNPIQVILDAVVN 80


>Medtr0306s0010.1 | ribosomal protein S7p/S5e | HC |
           scaffold0306:3884-3334 | 20130731
          Length = 86

 Score =  141 bits (356), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 64/76 (84%), Positives = 70/76 (92%)

Query: 46  SKHATYVPHTAGSYSVKRFRKAQCPLIERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHL 105
           SKHATY+PHT G YS K+FRKAQCP++ERLTNSLMMHGRNNGKKL  VRIIKHAMEIIHL
Sbjct: 5   SKHATYIPHTVGRYSKKQFRKAQCPIVERLTNSLMMHGRNNGKKLRVVRIIKHAMEIIHL 64

Query: 106 LTDLNPIQVIVDAVIN 121
           LTD NPIQVI+DAV+N
Sbjct: 65  LTDHNPIQVILDAVVN 80


>Medtr3g035660.1 | NAD(P)H-quinone oxidoreductase subunit 2 | HC |
           chr3:13225940-13230352 | 20130731
          Length = 871

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 58/173 (33%), Positives = 86/173 (49%), Gaps = 20/173 (11%)

Query: 39  DYIGVVASKHATYVPHTAGSYSVKRFRKAQCPLIERLTNSLMMHGRNNGKKLMAVRIIKH 98
           D +GV   +  T    TA S  + R R     L+  L N +M HG    KK +A +II  
Sbjct: 152 DAVGVKDRQQGTAEKKTAKSDPIYRNR-----LVNMLVNRIMKHG----KKSLAYQIIYR 202

Query: 99  AMEIIHLLTDLNPIQVIVDAVINSGP----REDATRIGSAGVVRRQAVDISPLRRVNQAI 154
           AM+ I   T  NP+ V+  A+    P    +    R+  +G  ++  V+I   +    AI
Sbjct: 203 AMKRIQQKTKTNPLYVLRQAIRGVTPDIAVKTKTRRV--SGSNKKVPVEIGSTQGKALAI 260

Query: 155 YLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
             L   +R+   RN   +A  L+ EL++AAKGS +  AI+KK E  R+A+ANR
Sbjct: 261 RWLLGASRKRPGRN---MAFKLSSELVDAAKGSGD--AIRKKQETHRMAEANR 308


>Medtr0002s0300.1 | 30S ribosomal protein S7 | HC |
           scaffold0002:191647-192045 | 20130731
          Length = 132

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 6/122 (4%)

Query: 87  GKKLMAVRIIKHAMEIIHLLTDLNPIQVIVDAVINSGPRED-ATRIGSAGVVRRQAVDIS 145
           GKK +A +I+  A++ I   T+ NP+ V+  A+    P     TR    G  R+  ++I 
Sbjct: 10  GKKSLAYQILYRAVKKIQQKTETNPLLVLRQAIRRVTPNIGVKTRRNKKGSTRKVPIEIG 69

Query: 146 PLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKA 205
             +    AI  L   +++   RN   +A  L+ EL++AAKGS    AI+KK+   R+A+A
Sbjct: 70  SKQGRALAIRWLLEASQKRPGRN---MAFKLSSELVDAAKGSGG--AIRKKEATHRMAEA 124

Query: 206 NR 207
           NR
Sbjct: 125 NR 126