Miyakogusa Predicted Gene

Lj0g3v0198799.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0198799.1 tr|Q8H6U4|Q8H6U4_PRUDU Heat shock protein 60
(Fragment) OS=Prunus dulcis GN=HSP60 PE=2 SV=1,75,0.00002,
,CUFF.12598.1
         (85 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g090130.1 | TCP-1/cpn60 chaperonin family protein | HC | c...    52   1e-07
Medtr1g090140.1 | TCP-1/cpn60 chaperonin family protein | HC | c...    51   2e-07

>Medtr1g090130.1 | TCP-1/cpn60 chaperonin family protein | HC |
           chr1:40370583-40364703 | 20130731
          Length = 576

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/29 (72%), Positives = 27/29 (93%)

Query: 50  QRVTISKDDTLILDGADDKKVIEERCKQV 78
           +++TISKDDT+ILDGA DKK IEERC+Q+
Sbjct: 352 KKITISKDDTVILDGAGDKKAIEERCEQI 380


>Medtr1g090140.1 | TCP-1/cpn60 chaperonin family protein | HC |
           chr1:40381503-40376286 | 20130731
          Length = 574

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/29 (72%), Positives = 27/29 (93%)

Query: 50  QRVTISKDDTLILDGADDKKVIEERCKQV 78
           +++TISKDDT+ILDGA DKK IEERC+Q+
Sbjct: 352 KKITISKDDTVILDGAGDKKSIEERCEQI 380