Miyakogusa Predicted Gene

Lj0g3v0198779.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0198779.1 Non Characterized Hit- tr|K3YXX5|K3YXX5_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si019124,26.75,0.000000000002,seg,NULL,CUFF.12594.1
         (428 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g045357.1 | shortage in chiasmata protein, putative | HC |...   409   e-114
Medtr6g045353.1 | hypothetical protein | HC | chr6:16281021-1628...    84   2e-16

>Medtr6g045357.1 | shortage in chiasmata protein, putative | HC |
           chr6:16283994-16291769 | 20130731
          Length = 1596

 Score =  409 bits (1052), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/333 (63%), Positives = 251/333 (75%), Gaps = 2/333 (0%)

Query: 98  QAEVIFEDHLPEADIEFLKESATIARSDKSDTVREPIQFETPE-LDTLLENECFTENERM 156
           +A+ IFEDH+  ADIE  KES T+ R D++  V EPIQFETPE LDTLLEN CFTE ERM
Sbjct: 5   EADFIFEDHVSNADIEVSKESETVTRGDENKVVYEPIQFETPEQLDTLLENVCFTEKERM 64

Query: 157 QMLSQTPDVENSLEMVKPEVLWQYPYEALXXXXXXXXXXXXYLKGEKEYSLEDNISMQHL 216
           +MLS+TP+VEN +EM+ PE L QYPYE L            YLKGE   + E NI +QHL
Sbjct: 65  EMLSKTPEVENCMEMLMPESLRQYPYEDLESVSRIEDVISEYLKGENACASEGNIPVQHL 124

Query: 217 PHIEQNIFLVLEVDEESLGIPSCLSMVEIVDSYFENIRPQNFDERYQSVTEGKELLGSEE 276
            H E+ +FL+LEVDEESLGIP+ LSMV+IV+SYF NI+PQ+FDERYQS+TEG ELL SE 
Sbjct: 125 AHSEKKMFLILEVDEESLGIPTSLSMVDIVESYFGNIKPQSFDERYQSITEGNELLDSEM 184

Query: 277 QNMMKFFSDDCXXXXXXXXXXXXPDNDFINMLETEHVDWNIALQGKGQVDSALLANLVTF 336
             M+K FS+DC            P+ DFINMLE+EHVD N+AL G  Q ++ALL NL+TF
Sbjct: 185 HEMVKLFSEDCVSKKSLVLSDIFPERDFINMLESEHVDRNVALDGTLQSNNALLVNLITF 244

Query: 337 QEYIFLDEDLIQTLDAFYDTKASVD-QERSDQMFMKEFNFKSFDELVVSNEMALIDDRFK 395
           QE++F DED+I T +AFYDTKAS D +E S  MF KEFNFKSFDEL+VSNEMAL DD+FK
Sbjct: 245 QEFVFFDEDMINTFEAFYDTKASNDLEETSYWMFKKEFNFKSFDELIVSNEMALGDDKFK 304

Query: 396 SLPVPVISDYEKLITPHDIIGELFSNMKTRPLS 428
           SLPVPVISD++K+I  HDII ELFSNMK + LS
Sbjct: 305 SLPVPVISDHKKMIYVHDIIEELFSNMKVQTLS 337


>Medtr6g045353.1 | hypothetical protein | HC |
          chr6:16281021-16281344 | 20130731
          Length = 107

 Score = 84.3 bits (207), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/99 (56%), Positives = 69/99 (69%), Gaps = 11/99 (11%)

Query: 1  MRTRFLNNDYFTLPPPSHRHHETLPFLHLPVPRLSTPPPSSVHNHLR---FHPPLRLSLL 57
          MRTRFLNNDYFTLPP     H   PFLHLPVPRL TPP ++ ++H     F P   LSL 
Sbjct: 1  MRTRFLNNDYFTLPP----LHP--PFLHLPVPRLPTPPSTTANHHHHHHLFTPLSNLSLH 54

Query: 58 TDPLPIDAALSTFLSDVLPHRIHLESYNLSV--PDLDTN 94
           DP PI++ALS+FLS VLPH+I +E  +L+V  PD D++
Sbjct: 55 LDPFPIESALSSFLSAVLPHQISVEENDLTVLNPDRDSS 93